Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2459778	2459858	81	2 [1]	[1] 2	USA300HOU_RS12665	hypothetical protein

ATCAATACAATTAAAATAATCTGAGTCACGGCAACTGCTATAACGCCTAAAATTTTAGCAAAAATATGTTGGATTGGTGAAATACTTGTAATAATCATTTCAATGACACGCGATGTTTTCTCACTAGCAATTTCCATAGCTA  >  USA300TCH1516_ALE/2459637‑2459778                                                                                                                                             |  aTCAATACAATTAAAATAATCTGAGTCACGGCAACTGCTATAACGCCTAAAATTTTAGCAAAAATATGTTGGATTGGTGAAATACTTGTAATAATCATTTCAATGACACGCGATGTTTTCTCACTAGCAATTTCCATAGCt   >  1:30879/1‑141 (MQ=255)  tCAATACAATTAAAATAATCTGAGTCACGGCAACTGCTATAACGCCTAAAATTTTAGCAAAAATATGTTGGATTGGTGAAATACTTGTAATAATCATTTCAATGACACGCGATGTTTTCTCACTAGCAATTTCCATAGCTa  <  2:64153/141‑1 (MQ=255)                                                                                                                                             |  ATCAATACAATTAAAATAATCTGAGTCACGGCAACTGCTATAACGCCTAAAATTTTAGCAAAAATATGTTGGATTGGTGAAATACTTGTAATAATCATTTCAATGACACGCGATGTTTTCTCACTAGCAATTTCCATAGCTA  >  USA300TCH1516_ALE/2459637‑2459778

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑