Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2459778	2459858	81	2 [1]	[1] 2	USA300HOU_RS12665	hypothetical protein

ATGCCATAAGCTAAAGCATAGTTGAAAATCTTTTGTCCTTCTGATACTTTATCGACTTCATCATTAGAAATCACCTTATTATCAACTTTACTTTGTGCTTGTAATTTTTGTAAGTCTTCTTTGTTGATATTTAATTCCCCGGCTACCATATTTGTTTGAATAGCTGTAAGCAGTGCT  >  USA300TCH1516_ALE/2459823‑2459999                                     |                                                                                                                                             aTGCCATAAGCTAAAGCATAGTTGAAAATCTTTTGTCCTTCTGATACTTTATCGACTTCATCATTAGAAATCACCTTATTATCAACTTTACTTTGTGCTTGTAATTTTTGTAAGTCTTCTTTGTTGATATTTAATTCCCCg                                      >  1:351/1‑141 (MQ=255)                                     ccTTCTGATACTTTATCGACTTCATCATTAGAAATCACCTTATTATCAACTTTACTTTGTGCTTGTAATTTTTGTAAGTCTTCTTTGTTGATATTTAATTCCCCGGCTACCATATTTGTTTGAATAGCTGTAAGCAGTGCt  <  2:30879/141‑1 (MQ=255)                                     |                                                                                                                                             ATGCCATAAGCTAAAGCATAGTTGAAAATCTTTTGTCCTTCTGATACTTTATCGACTTCATCATTAGAAATCACCTTATTATCAACTTTACTTTGTGCTTGTAATTTTTGTAAGTCTTCTTTGTTGATATTTAATTCCCCGGCTACCATATTTGTTTGAATAGCTGTAAGCAGTGCT  >  USA300TCH1516_ALE/2459823‑2459999

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑