Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2483910	2483947	38	2 [1]	[1] 2	USA300HOU_RS12795	hypothetical protein

CAAATATTATCCACTGAACCCACAATCAACTATTGGCATATTGTATTATACGCATTTCACAGAAACTACCGTAATGTTGATTTCTATCATTTTATGGTTACTCATAGGCGTCGTCTTTTTCCTTGGAGATTTTATCTTTAAATACAC  >  USA300TCH1516_ALE/2483769‑2483915                                                                                                                                             |       cAAATATTATCCACTGAACCCACAATCAACTATTGGCATATTGTATTATACGCATTTCACAGAAACTACCGTAATGTTGATTTCTATCATTTTATGGTTACTCATAGGCGTCGTCTTTTTCCTTGGAGATTTTATCTTTaa        >  1:34312/1‑141 (MQ=255)       ttatCCACTGAACCCACAATCAACTATTGGCATATTGTATTATACGCATTTCACAGAAACTACCGTAATGTTGATTTCTATCATTTTATGGTTACTCATAGGCGTCGTCGTTTTCCTTGGAGATTTTATCTTTAAATacac  <  2:13251/141‑1 (MQ=255)                                                                                                                                             |       CAAATATTATCCACTGAACCCACAATCAACTATTGGCATATTGTATTATACGCATTTCACAGAAACTACCGTAATGTTGATTTCTATCATTTTATGGTTACTCATAGGCGTCGTCTTTTTCCTTGGAGATTTTATCTTTAAATACAC  >  USA300TCH1516_ALE/2483769‑2483915

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑