Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2483910	2483947	38	2 [1]	[1] 2	USA300HOU_RS12795	hypothetical protein

GCATTTCATAACAACGTATGTCGGATTCTTGCCTTTAGCAATGCTTGCCGGTTGGTTTCCACTAACAGTGCATTATCTAATCATATTCACAATTATCTTCATTGTGGTTTATGTATTAATTTGGATAATTCAATTCTTTAAAA  >  USA300TCH1516_ALE/2483946‑2484088   |                                                                                                                                             gCATTTCATAACAACGTATGTCGGATTCTTGCCTTTAGCAATGCTTGCCGGTTGGTTTCCACTAACAGTGCATTATCTAATCATATTCACAATTATCTTCATTGTGGTTTATGTATTAATTTGGATAATTCAATTCTTTaa    <  2:34312/141‑1 (MQ=255)   aTTTCATAACAACGTATGTCGGATTCTTGCCTTTAGCAATGCTTGCCGGTTGGTTTCCACTAACAGTGCATTATCTAATCATATTCACAATTATCTTCATTGTGGTTTATGTATTAATTTGGATAATTCAATTCTTTaaaa  >  2:18884/1‑141 (MQ=255)   |                                                                                                                                             GCATTTCATAACAACGTATGTCGGATTCTTGCCTTTAGCAATGCTTGCCGGTTGGTTTCCACTAACAGTGCATTATCTAATCATATTCACAATTATCTTCATTGTGGTTTATGTATTAATTTGGATAATTCAATTCTTTAAAA  >  USA300TCH1516_ALE/2483946‑2484088

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑