Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2508087	2508170	84	2 [1]	[1] 2	USA300TCH1516_02393	Acid shock protein

ATAATGGCTTTGTAATACAAATTTCTATAATGGAAGTGATGATATTGAACTTCAATCAATTCGAGAATCAAAACTTTTTTAACGCTAATCCAAGTGATACATTTAAAGATTTAGGTAAACAAGTATTTAATTACTTTTCAACACCTTCATTTGTAACGAATATATATGAAACAGACGAATTATATTACTTAG  >  USA300TCH1516_ALE/2507946‑2508137                                                                                                                                             |                                                    ataATGGCTTTGTAATACAAATTTCTATAATGGAAGTGATGATATTGAACTTCAATCAATTCGAGAATCAAAACTTTTTTAACGCTAATCCAAGTGATACATTTAAAGATTTAGGTAAACAAGTATTTAATTACTTTTCaa                                                     >  2:32147/1‑141 (MQ=255)                                                    tcaatcaaTTCGAGAATCAAAACTTTTTTAACGCTAATCCAAGTGATACATTTAAAGATTTAGGTAAACAAGTATTTAATTACTTTTCAACACCTTCATTTGTAACGAATATATATGAAACAGACGAATTATATTACTTAg  <  1:32147/141‑1 (MQ=255)                                                                                                                                             |                                                    ATAATGGCTTTGTAATACAAATTTCTATAATGGAAGTGATGATATTGAACTTCAATCAATTCGAGAATCAAAACTTTTTTAACGCTAATCCAAGTGATACATTTAAAGATTTAGGTAAACAAGTATTTAATTACTTTTCAACACCTTCATTTGTAACGAATATATATGAAACAGACGAATTATATTACTTAG  >  USA300TCH1516_ALE/2507946‑2508137

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑