Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2527466	2527499	34	2 [1]	[1] 2	[USA300TCH1516_02411]	[USA300TCH1516_02411]

GATTAAATTTCAGAAAAATCTTTTTATTCTCTCGAAAATGTAGTTTTCTTTCATAAAAACAGCGAGATAAATCGCGTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTT  >  USA300TCH1516_ALE/2527325‑2527482                                                                                                                                             |                  gATTAAATTTCAGAAAAATCTTTTTATTCTCTCGAAAATGTAGTTTTCTTTCATAAAAACAGCGAGATAAATCGCGTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAg                   <  1:14176/141‑1 (MQ=255)                  aTCTTTTTATTCTCTCGAAAATGTAGTTTTCTTTCATAAAAACAGCGAGATAAATCGCGTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCttttt  <  1:54821/141‑1 (MQ=255)                                                                                                                                             |                  GATTAAATTTCAGAAAAATCTTTTTATTCTCTCGAAAATGTAGTTTTCTTTCATAAAAACAGCGAGATAAATCGCGTGATTGGCTAATATCTTTATGATTTAAGATATTACGACGCTCATTTTATCTCGCTTTATGTAAAGTATTACTTATTCTTTTT  >  USA300TCH1516_ALE/2527325‑2527482

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑