Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2562155	2562248	94	2 [1]	[1] 2	cpdA/cycA_2	3',5'‑cyclic adenosine monophosphate phosphodiesterase CpdA/D‑serine/D‑alanine/glycine transporter

TAAATCGGCGATTGTCCCTATCTTCATACCCTTACCTTCTTTACTCAAATTAAAATGTTATTTATTATGCCATAGCTTATCTAATATATATAGTTAACTGCTTCATTTAGATGATTATTTTATATTTTTGCATAAAAACTTAT  >  USA300TCH1516_ALE/2562014‑2562156                                                                                                                                             |   tAAATCGGCGATTGTCCCTATCTTCATACCCTTACCTTCTTTACTCAAATTAAAATGTTATTTATTATGCCATAGCTTATCTAATATATATAGTTAACTGCTTCATTTAGATGATTATTTTATATTTTTGCATAAAAACtt    <  1:56648/141‑1 (MQ=255)   aaTCGGCGATTGTCCCTATCTTCATACCCTTACCTTCTTTACTCAAATTATAATGTTATTTATTATGCCATAGCTTATCTAATATATATAGTTAACTGCTTCATTTAGATGATTATTTTATATTTTTGCATAAAAACTtat  <  2:30011/141‑1 (MQ=255)                                                                                                                                             |   TAAATCGGCGATTGTCCCTATCTTCATACCCTTACCTTCTTTACTCAAATTAAAATGTTATTTATTATGCCATAGCTTATCTAATATATATAGTTAACTGCTTCATTTAGATGATTATTTTATATTTTTGCATAAAAACTTAT  >  USA300TCH1516_ALE/2562014‑2562156

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑