Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2562155	2562248	94	2 [1]	[1] 2	cpdA/cycA_2	3',5'‑cyclic adenosine monophosphate phosphodiesterase CpdA/D‑serine/D‑alanine/glycine transporter

TTTTTTCTTATATTTAAAAAAATAATTGCTTTATTAAATGGATTTCTTTAGTATTTATAATTAAGAAAACGCTTACACACAACTTTTTTATTTGCTTTATCCTGAGGAGGAAAATTATGGCAAGAAAATTGCATAGAGAGTTGAATAACAGACACATCCAATTAATAGCAATTGGGGGCG  >  USA300TCH1516_ALE/2562210‑2562389                                        |                                                                                                                                             ttttttCTTATATTTAAAAAAATAATTGCTTTATTAAATGGATTTCTTTAGTATTTATAATTAAGAAAACGCTTACACACAACTTTTTTATTTGCTTTATCCTGAGGAGGAAAATTATGGCAAGAAAATTGCATAGAGAGt                                         <  1:52207/141‑1 (MQ=255)                                        ggATTTCTTTAGTATTTATAATTAAGAAAACGCTTACACACAACTTTTTTATTTGCTTTATCCTGAGGAGGAAAATTATGGCAAGAAAATTGCATAGAGAGTTGAATAACAGACACATCCAATTAATAGCAATTGGGGgcg  >  1:50176/1‑141 (MQ=255)                                        |                                                                                                                                             TTTTTTCTTATATTTAAAAAAATAATTGCTTTATTAAATGGATTTCTTTAGTATTTATAATTAAGAAAACGCTTACACACAACTTTTTTATTTGCTTTATCCTGAGGAGGAAAATTATGGCAAGAAAATTGCATAGAGAGTTGAATAACAGACACATCCAATTAATAGCAATTGGGGGCG  >  USA300TCH1516_ALE/2562210‑2562389

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑