Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2578823	2578852	30	2 [1]	[1] 2	yveA	Aspartate‑proton symporter

GTCGCATATTATTTTTTGTATTTTTGGCAATAACGAAGGAGTATTTATGAATAAAGACAAGCAATTGCACAACGACAAAATCAATCTATCCCAATTAGTCTTATTAGGGTTAGGCTCTTTAATAGGATCTGGTTGGCTATTTGGTGCGTGG  >  USA300TCH1516_ALE/2578682‑2578832                                                                                                                                             |           gTCGCATATTATTTTTTGTATTTTTGGCAATAACGAAGGAGTATTTATGAATAAAGACAAGCAATTGCACAACGACAAAATCAATCTATCCCAATTAGTCTTATTAGGGTTAGGCTCTTTAATAGGATCTGGTTGGCTAtt            <  2:24223/141‑1 (MQ=255)           attTTTTGTATTTTTGGCAATAACGAAGGAGTATTTATGAATAAAGACAAGCAATTGCACAACGACAAAATCAATCTATCCCAATTAGTCTTATTAGGGTTAGGCTCTTTAATAGGATCTGGTTGGCTATTTGGTGCGTgg  >  1:29445/1‑141 (MQ=255)                                                                                                                                             |           GTCGCATATTATTTTTTGTATTTTTGGCAATAACGAAGGAGTATTTATGAATAAAGACAAGCAATTGCACAACGACAAAATCAATCTATCCCAATTAGTCTTATTAGGGTTAGGCTCTTTAATAGGATCTGGTTGGCTATTTGGTGCGTGG  >  USA300TCH1516_ALE/2578682‑2578832

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑