Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2578823	2578852	30	2 [1]	[1] 2	yveA	Aspartate‑proton symporter

TGGACCAGCAGCAATCATATCATGGGTTCTTGGATTCCTAGTCATTGGAACCATTGCCTATAACTACATTGAAATCGGCACAATGTTTCCTCAATCAGGTGGCATGAGTAACTATGCCCAGTATACACATGGCTCATTATTAGG  >  USA300TCH1516_ALE/2578850‑2578993    |                                                                                                                                             tGGACCAGCAGCAATCATATCATGGGATCTTGGACTCCTAGTCATTGGAACCATTGCCTATAACTACATTGAAATCGGCACAATGTTTCCTCAATCAGGTGGCATGAGTAACTATGCCCAGTATACACATGGCTCattatt     >  1:47715/1‑141 (MQ=255)    aCCAGCAGCAATCATATCATGGGTTCTTGGATTCCTAGTCATTGGAACCATTGCCTATAACTACATTGAAATCGGCACAATGTTTCCTCAATCAGGTGGCATGAGTAACTATGCCCAGTATACACATGGCTCATTATTAgg  >  1:53687/1‑141 (MQ=255)    |                                                                                                                                             TGGACCAGCAGCAATCATATCATGGGTTCTTGGATTCCTAGTCATTGGAACCATTGCCTATAACTACATTGAAATCGGCACAATGTTTCCTCAATCAGGTGGCATGAGTAACTATGCCCAGTATACACATGGCTCATTATTAGG  >  USA300TCH1516_ALE/2578850‑2578993

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑