Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2633610	2633644	35	2 [1]	[1] 2	fnbA_2	Fibronectin‑binding protein A

CAGTGTGCTTATTGAATCCGTGAATATGTGGCACACTGTCGAAGTCGATATCAATGATGTTACCGCCATGTTCATACTTAGGTTTGTCTTTTTCTGTATCTTCCTCGAATGACTGATTACCTTTATTTTGACCATGAATTTGAGGTACACTATCAAAATCGA  >  USA300TCH1516_ALE/2633469‑2633630                                                                                                                                             |                      cAGTGTGCTTATTGAATCCGTGAATATGTGGCACACTGTCGAAGTCGATATCAATGATGTTACCGCCATGTTCATACTTAGGTTTGTCTTTTTCTGTATCTTCCTCGAATGACTGATTACCTTTATTTTGACCATGAAttt                       <  1:63617/141‑1 (MQ=255)                      gAATATGTGGCACACTGTCGAAGTCGATATCAATGATGTTACCGCCATGTTCATACTTAGGTTTGTCTTTTTCTGTATCTTCCTCGAATGACTGATTACCTTTATTTTGACCATGAATTTGAGGTACACTATCAAAATCGa  >  2:24466/1‑141 (MQ=255)                                                                                                                                             |                      CAGTGTGCTTATTGAATCCGTGAATATGTGGCACACTGTCGAAGTCGATATCAATGATGTTACCGCCATGTTCATACTTAGGTTTGTCTTTTTCTGTATCTTCCTCGAATGACTGATTACCTTTATTTTGACCATGAATTTGAGGTACACTATCAAAATCGA  >  USA300TCH1516_ALE/2633469‑2633630

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑