Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2658954	2659012	59	2 [1]	[1] 2	USA300HOU_RS13680	Putative NAD(P)H nitroreductase

AATCAATACCTAACAATGCGGCTGTCGTCATCATATTGCCTAATGCAATATACGTTTGTTTACTTGACCAGTCATACAAGGCTTGATCATTATCAGAAATATGGAAATCTGCTTGGAATGCATCGAATTTTTGTTCAACAGCTGGAATCGTTTGTG  >  USA300TCH1516_ALE/2658813‑2658968                                                                                                                                             |                aaTCAATACCTAACAATGCGGCTGTCGTCATCATATTGCCTAATGCAATATACGTTTGTTTACTTGACCAGTCATACAAGGCTTGATCATTATCAGAAATATGGAAATCTGCTTGGAATGCATCGAATTTTTGTTCAACAg                 >  2:23572/1‑141 (MQ=255)                aTGCGGCTGTCGTCATCATATTGCCTAATGCAATATACGTTTGTTTACTTGACCAGTCATACAAGGCTTGATCATTATCAGAAATATGGGAATCTGCTTGGAATGCATCGAATTTTTGTTCAACAGCTGGAATCGTTtgtg  >  1:36330/1‑141 (MQ=255)                                                                                                                                             |                AATCAATACCTAACAATGCGGCTGTCGTCATCATATTGCCTAATGCAATATACGTTTGTTTACTTGACCAGTCATACAAGGCTTGATCATTATCAGAAATATGGAAATCTGCTTGGAATGCATCGAATTTTTGTTCAACAGCTGGAATCGTTTGTG  >  USA300TCH1516_ALE/2658813‑2658968

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑