Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2658954	2659012	59	2 [1]	[1] 2	USA300HOU_RS13680	Putative NAD(P)H nitroreductase

CATATGTTGTACATACGGTGATCTTGACGTTACATTTTTACGCGCAAAAATTAGCACAAAATGGCTCGCTGTATCTAATTGTTTTGCTGCGCCCCAACTGTGCGCTTTTAATTCATCACGTAACGCTTGATCTTGAATCACGACAAACTTCCAAGGTTCT  >  USA300TCH1516_ALE/2658994‑2659153                    |                                                                                                                                             cATATGTTGTACATACGGTGATCTTGACGTTACATTTTTACGCGCAAAAATTAGCACAAAATGGCTCGCTGTATCTAATTGTTTTGCTGCGCCCCAACTGTGCGCTTTTAATTCATCACGTAACGCTTGATCTTGAATCAc                     >  2:14342/1‑141 (MQ=255)                    gATCTTGACGTTACATTTTTACGCGCAAAAATTAGCACAAAATGGCTCGCTGTATCTAATTGTTTTGCTGCGCCCCAACTGTGCGCTTTTAATTCATCACGTAACGCTTGATCTTGAATCACGACAAACTTCCAAGGTTCt  <  1:23572/141‑1 (MQ=255)                    |                                                                                                                                             CATATGTTGTACATACGGTGATCTTGACGTTACATTTTTACGCGCAAAAATTAGCACAAAATGGCTCGCTGTATCTAATTGTTTTGCTGCGCCCCAACTGTGCGCTTTTAATTCATCACGTAACGCTTGATCTTGAATCACGACAAACTTCCAAGGTTCT  >  USA300TCH1516_ALE/2658994‑2659153

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑