Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2824004	2824066	63	2 [1]	[0] 2	ywqD_2	Tyrosine‑protein kinase YwqD

TTAGGCATTCTATTTAAGACTACACCTAATAATTTAGCACCTGTTGCTTCAATAAGTTCTTTTCCTTTTTTAACTTCATCTCTATTATTATTTTCCGAATTAACTACGTAGACAACATTGCCGGTAAACTTTGAAAATAATTGCGCATCTGTAACTGTGTTCACTGGTGGCGTATCG  >  USA300TCH1516_ALE/2823863‑2824039                                                                                                                                             |                                     ttAGGCATTCTATTTAAGACTACACCTAATAATTTAGCACCTGTTGCTTCAATAAGTTCTTTTCCTTTTTTAACTTCATCTCTATTATTATTTTCCGAATTAACTACGTAGACAACATTGCCGGTAAACTTTGAAaataat                                      <  1:26444/141‑1 (MQ=255)                                     gCACCTGTTGCTTCAATAAGTTCTTTTCCTTTTTTAACTTCATCTCTATTATTATTTTCCGAATTAACTACGTAGACAACATTGCCGGTAAACTTTGAAAATAATTGCGCATCTGTAACTGTGTTCACTGGTGGCGTATCg  >  2:17167/1‑141 (MQ=255)                                                                                                                                             |                                     TTAGGCATTCTATTTAAGACTACACCTAATAATTTAGCACCTGTTGCTTCAATAAGTTCTTTTCCTTTTTTAACTTCATCTCTATTATTATTTTCCGAATTAACTACGTAGACAACATTGCCGGTAAACTTTGAAAATAATTGCGCATCTGTAACTGTGTTCACTGGTGGCGTATCG  >  USA300TCH1516_ALE/2823863‑2824039

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑