Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2824004	2824066	63	2 [1]	[0] 2	ywqD_2	Tyrosine‑protein kinase YwqD

AATGTGTCATACAAATTTGCAAATGCCCTTGATGTAATTAACTCTGACGGATTCGGTGGGATTGGCCCAGACGTCAAGACGTCTAAATCTTGAATTTCAGTTGAGATAATACTGTCTTGATAAGTTGACCAATTTAGCAAT  >  USA300TCH1516_ALE/2824067‑2824207 |                                                                                                                                             aatGTGTCATACAAATTTGCAAATGCCCTTGATGTAATTAACTCTGACGGATTCGGTGGGATTGGCCCAGACGTCAAGACGTCTAAATCTTGAATTTCAGTTGAGATAATACTGTCTTGATAAGTTGACCAATTTAGCAAt  >  1:45775/1‑141 (MQ=255) aatGTGTCATACAAATTTGCAAATGCCCTTGATGTAATTAACTCTGACGGATTCGGTGGGATTGGCCCAGACGTCAAGACGTCTAAATCTTGAATTTCAGTTGAGATAATACTGTCTTGATAAGTTGACCAATTTAGCAAt  >  2:38008/1‑141 (MQ=255) |                                                                                                                                             AATGTGTCATACAAATTTGCAAATGCCCTTGATGTAATTAACTCTGACGGATTCGGTGGGATTGGCCCAGACGTCAAGACGTCTAAATCTTGAATTTCAGTTGAGATAATACTGTCTTGATAAGTTGACCAATTTAGCAAT  >  USA300TCH1516_ALE/2824067‑2824207

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑