Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2852943	2853019	77	2 [1]	[1] 2	yflS	Putative malate transporter YflS

AATTATTACTGTACATCTTTTGTAGTTAGCTTTATTCTTAAATTGAAATATGTATAAAACATAGAAAGAAGGACGTTTTAACATGGAAAACACGGTTAAATATCGTAAGTTTATACTCCCTATCGTTGTAGGTCTCCTTATTTGGGCACTTACACCTTTTAAACCGGATGCTGTGGATCCAA  >  USA300TCH1516_ALE/2852802‑2852983                                                                                                                                             |                                          aaTTATTACTGTACATCTTTTGTAGTTAGCTTTATTCTTAAATTGAAATATGTATAAAACATAGAAAGAAGGACGTTTTAACATGGAAAACACGGTTAAATATCGTAAGTTTATACTCCCTATCGTTGTAGGTCTCCTTAt                                           >  2:36605/1‑141 (MQ=255)                                          aTTGAAATATGTATAAAACATAGAAAGAAGGACGTTTTAACATGGAAAACACGGTTAAATATCGTAAGTTTATACTCCCTATCGTTGTAGGTCTCCTTATTTGGGCACTTACACCTTTTAAACCGGATGCTGTGGATCCaa  >  2:34706/1‑141 (MQ=255)                                                                                                                                             |                                          AATTATTACTGTACATCTTTTGTAGTTAGCTTTATTCTTAAATTGAAATATGTATAAAACATAGAAAGAAGGACGTTTTAACATGGAAAACACGGTTAAATATCGTAAGTTTATACTCCCTATCGTTGTAGGTCTCCTTATTTGGGCACTTACACCTTTTAAACCGGATGCTGTGGATCCAA  >  USA300TCH1516_ALE/2852802‑2852983

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑