Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2852943	2853019	77	2 [1]	[1] 2	yflS	Putative malate transporter YflS

TATTCGTCGCGACAATCATTGCTTGTATTACACAACCGATGCCAATTGGGGCCGTCTCTATAATTGGATTTACAATCATGGTACTCGTTGGCATTGTTGACATGAAAACGGCTGTCGCTGGTTTTGGTAATAATAGCATTTGGTTAATTGCTATGG  >  USA300TCH1516_ALE/2853005‑2853160                |                                                                                                                                             tatTCGTCGCGACAATCATTGCTTGTATTACACAACCGATGCCAATTGGGGCCGTCTCTATAATTGGATTTACAATCATGGTACTCGTTGGCATTGTTGACATGAAAACGGCTGTCGCTGGTTTTGGTAATAATAGCAttt                 >  2:25342/1‑141 (MQ=255)                tCATTGCTTGTATTACACAACCGATGCCAATTGGGGCCGTCTCTATAATTGGATTTACAATCATGGTACTCGTTGGCATTGTTGACATGAAAACGGCTGTCGCTGGTTTTGGTAATAATAGCATTTGGTTAATTGCTATgg  >  2:11788/1‑141 (MQ=255)                |                                                                                                                                             TATTCGTCGCGACAATCATTGCTTGTATTACACAACCGATGCCAATTGGGGCCGTCTCTATAATTGGATTTACAATCATGGTACTCGTTGGCATTGTTGACATGAAAACGGCTGTCGCTGGTTTTGGTAATAATAGCATTTGGTTAATTGCTATGG  >  USA300TCH1516_ALE/2853005‑2853160

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑