Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	322076	322150	75	2 [1]	[1] 2	USA300HOU_RS01440/lytM_2	Penicillin acylase/Glycyl‑glycine endopeptidase LytM

GATATGATTTGATGGATGATTACTATCATGCATTAGCGTTGAATCGCGAACATGGACGAACGATTAGTTGTTAATTTTGAAAATTTATAAAAGGTTAAACGAATGCAGTGAGAGATGTCATTTTAATATCAATGTATGGCTATTTTGTAATGACA  >  USA300TCH1516_ALE/321935‑322089                                                                                                                                             |               gATATGATTTGATGGATGATTACTATCATGCATTAGCGTTGAATCGCGAACATGGACGAACGATTAGTTGTTAATTTTGAAAATTTATAAAAGGTTAAACGAATGCAGTGAGAGATGTCATTTTAATATCAATGTATGGCt                <  1:62212/141‑1 (MQ=255)               gatgatTACTATCATGCATTAGCGTTGAATCGCGAACATGGACGAACGATTAGTTGTTAATTTTGAAAATTTATAAAAGGTTAAACGAATGCAGTGAGAGATGTCATTTTAATATCAATGTATGGCTATTTTGTAATGACa  <  2:11062/141‑1 (MQ=255)                                                                                                                                             |               GATATGATTTGATGGATGATTACTATCATGCATTAGCGTTGAATCGCGAACATGGACGAACGATTAGTTGTTAATTTTGAAAATTTATAAAAGGTTAAACGAATGCAGTGAGAGATGTCATTTTAATATCAATGTATGGCTATTTTGTAATGACA  >  USA300TCH1516_ALE/321935‑322089

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑