Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	480294	480437	144	2 [1]	[1] 2	USA300HOU_RS02280	hypothetical protein

TCAGTATTGTTAAATGACACACAAGCAGTTGATGAAAATAATAGCGAGCTAAATCAGATGGGCACATCAACGAAAGCGCAAATTGCATTTTGTATAGATGTTCGTTCAGAACCATTTCGTAGACATATCGAAGCAGCAGGGCCCTTTGAAACGATTGGTATTGCAGGCTTCTTTGGA  >  USA300TCH1516_ALE/480153‑480329                                                                                                                                             |                                     tCAGTATTGTTAAATGACACACAAGCAGTTGATGAAAATAATAGCGAGCTAAATCAGATGGGCACATCAACGAAAGCGCAAATTGCATTTTGTATAGATGTTCGTTCAGAACCATTTCGTAGACATATCGAAGCAGCAggg                                      >  2:26743/1‑141 (MQ=255)                                     aataatAGCGAGCTAAATCAGATGGGCACATCAACGAAAGCGCAAATTGCATTTTGTATAGATGTTCGTTCAGAACCATTTCGTAGACATATCGAAGCAGCAGGGCCCTTTGAAACGATTGGTATTGCAGGCTTCTTTGGa  <  1:60407/141‑1 (MQ=255)                                                                                                                                             |                                     TCAGTATTGTTAAATGACACACAAGCAGTTGATGAAAATAATAGCGAGCTAAATCAGATGGGCACATCAACGAAAGCGCAAATTGCATTTTGTATAGATGTTCGTTCAGAACCATTTCGTAGACATATCGAAGCAGCAGGGCCCTTTGAAACGATTGGTATTGCAGGCTTCTTTGGA  >  USA300TCH1516_ALE/480153‑480329

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑