Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	519347	519529	183	2 [1]	[1] 2	speA_2	Arginine decarboxylase

ACCAATTAAATATTCCTGTACTCATTGACGAAGCACACGGCGCGCACTTTGGATTGCAAGGATTTCCAGATTCTACATTAAATTATCAAGCTGACTATGTTGTTCAATCTTTTCATAAAACGTTACCAGCTTTAACGATGGGCTCGGTACTTTATATTCATAAAAATGCA  >  USA300TCH1516_ALE/519206‑519375                                                                                                                                             |                              aCCAATTAAATATTCCTGTACTCATTGACGAAGCACACGGCGCGCACTTTGGATTGCAAGGATTTCCAGATTCTACATTAAATTATCAAGCTGACTATGTTGTTCAATCTTTTCATAAAACGTTACCAGCTTTAACGATgg                               <  1:43453/141‑1 (MQ=255)                              gAAGCACACGGCGCGCACTTTGGATTGCAAGGATTTCCAGATTCTACATTAAATTATCAAGCTGACTATGTTGTTCAATCTTTTCATAAAACGTTACCAGCTTTAACGATGGGCTCGGTACTTTATATTCATAAAAATGCa  <  1:24823/141‑1 (MQ=255)                                                                                                                                             |                              ACCAATTAAATATTCCTGTACTCATTGACGAAGCACACGGCGCGCACTTTGGATTGCAAGGATTTCCAGATTCTACATTAAATTATCAAGCTGACTATGTTGTTCAATCTTTTCATAAAACGTTACCAGCTTTAACGATGGGCTCGGTACTTTATATTCATAAAAATGCA  >  USA300TCH1516_ALE/519206‑519375

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑