Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	519347	519529	183	2 [1]	[1] 2	speA_2	Arginine decarboxylase

TGATTATGGCTAGTTTAGAGTCAGCTGCCGAGTTCTATAAAACATATGATAGTACCGTGTTTTTTGATAAGAGAGCGCAATTAATCGAATGTTTGGAGAAGAAGGGTTTTGAAATGCTTCAAGTTGATGATCCGTTGAAGTTGCTGATAAAATATGAAGGTTTTACAGGTCATGATATTCAAAATTGGTTTATGAATGCACATATCTATTTAGAATTAGCGGACGACTATCAAG  >  USA300TCH1516_ALE/519437‑519670                                                                                              |                                                                                                                                             tGATTATGGCTAGTTTAGAGTCAGCTGCCGAGTTCTATAAAACATATGATAGTACCGTGTTTTTTGATAAGAGAGCGCAATTAATCGAATGTTTGGAGAAGAAGGGTTTTGAAATGCTTCAAGTTGATGATCCGTTGAAGt                                                                                               >  1:45087/1‑141 (MQ=255)                                                                                              tGGAGAAGAAGGGTTTTGAAATGCTTCAAGTTGATGATCCGTTGAAGTTGCTGATAAAATATGAAGGTTTTACAGGTCATGATATTCAAAATTGGTTTATGAATGCACATATCTATTTAGAATTAGCGGACGACTATCAAg  >  1:25617/1‑141 (MQ=255)                                                                                              |                                                                                                                                             TGATTATGGCTAGTTTAGAGTCAGCTGCCGAGTTCTATAAAACATATGATAGTACCGTGTTTTTTGATAAGAGAGCGCAATTAATCGAATGTTTGGAGAAGAAGGGTTTTGAAATGCTTCAAGTTGATGATCCGTTGAAGTTGCTGATAAAATATGAAGGTTTTACAGGTCATGATATTCAAAATTGGTTTATGAATGCACATATCTATTTAGAATTAGCGGACGACTATCAAG  >  USA300TCH1516_ALE/519437‑519670

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑