Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	610969	611200	232	2 [1]	[1] 3	azo1	FMN‑dependent NADPH‑azoreductase

AATTAGATTTTTCAGGAACAACACCGTCTATTGATGAAATCAAACAAAATATGAAAGATTTAAAAGAGAAAGCAATGGCGGCGGACTTTTTAATATTAGGAACGCCAAACTATCATGGTTCATATTCTGGAATATTGAAAAATGCATTAG  >  USA300TCH1516_ALE/610828‑610977                                                                                                                                             |          aaTTAGATTTTTCAGGAACAACACCGTCTATTGATGAAATCAAACAAAATATGAAAGATTTAAAAGAGAAAGCAATGGCGGCGGACTTTTTAATATTAGGAACGCCAAACTATCATGGTTCATATTCTGGAATATTGaaaa           <  1:12003/141‑1 (MQ=255)          tttCAGGAACAACACCGTCTATTGATGAAATCAAACAAAATATGAAAGATTTAAAAGAGAAAGCAATGGCGGCGGACTTTTTAATATTAGGAACGCCAAACTATCATGGTTCATATTCTGGAATATTGAAAAATGCATTAg  <  1:40324/141‑1 (MQ=255)                                                                                                                                             |          AATTAGATTTTTCAGGAACAACACCGTCTATTGATGAAATCAAACAAAATATGAAAGATTTAAAAGAGAAAGCAATGGCGGCGGACTTTTTAATATTAGGAACGCCAAACTATCATGGTTCATATTCTGGAATATTGAAAAATGCATTAG  >  USA300TCH1516_ALE/610828‑610977

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑