Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	655702	655803	102	2 [1]	[1] 2	USA300HOU_RS03130	hypothetical protein

CCAGCTATAGGTAGCATACTTTTATTTGGCACTATGTTTAGAGATAAAATATATATACCTGATTCTCATTTAGAAAAAAATTGCGTTATTATCATTTGTTCGGTTTTATTATTAAGTATTCTAGTGTTTTATATATATTTAAATCAGAAAGTAAAGTTAT  >  USA300TCH1516_ALE/655561‑655720                                                                                                                                             |                    ccAGCTATAGGTAGCATACTTTTATTTGGCACTATGTTTAGAGATAAAATATATATACCTGATTCTCATTTAGAAAAAAATTGCGTTATTATCATTTGTTCGGTTTTATTATTAAGTATTCTAGTGTTTTATATATATTTa                     >  2:60228/1‑141 (MQ=255)                    ttttATTTGGCACTATGTTTAGAGATAAAATATATATACCTGATTCTCATTTAAAAAAAAATTGCGTTATTATCATTTGTTCGGTTTTATTATTAAGTATTCTAGTGTTTTATATATATTTAAATCAGAAAGTAAAGTtat  <  2:50010/141‑1 (MQ=255)                                                                                                                                             |                    CCAGCTATAGGTAGCATACTTTTATTTGGCACTATGTTTAGAGATAAAATATATATACCTGATTCTCATTTAGAAAAAAATTGCGTTATTATCATTTGTTCGGTTTTATTATTAAGTATTCTAGTGTTTTATATATATTTAAATCAGAAAGTAAAGTTAT  >  USA300TCH1516_ALE/655561‑655720

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑