Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	754591	754628	38	2 [1]	[1] 2	USA300HOU_RS03685	hypothetical protein

CATCATCAACATATAATGTTGATACATGTGGAGGATATAATTGGTTCGAAAAATGGCTGAAGCTCCGAATAATTGTCACAAAAATGCCTGTCTCAGTTGTTAAATCTATAATAGAATCAACAACAGGACAAGCATCTCCATCAATAATAA  >  USA300TCH1516_ALE/754620‑754769          |                                                                                                                                             catcatCAACATATAATGTTGATACATGTGGAGGATATAATTGGTTCGAAAAATGGCTGAAGCTCCGAATAATTGTCACAAAAATGCCTGTCTCAGTTGTTAAATCTATAATAGAATCAACAACAGGACAAGCATCTCCAt           >  1:23654/1‑141 (MQ=255)          cATATAATGTTGATACATGTGGAGGATATAATTGGTTCGAAAAATGGCTGAAGCTCCGAATAATTGTCACAAAAATGCCTGTCTCAGTTGTTAAATCTATAATAGAATCAACAACAGGACAAGCATCTCCATCaataataa  >  1:42203/1‑141 (MQ=255)          |                                                                                                                                             CATCATCAACATATAATGTTGATACATGTGGAGGATATAATTGGTTCGAAAAATGGCTGAAGCTCCGAATAATTGTCACAAAAATGCCTGTCTCAGTTGTTAAATCTATAATAGAATCAACAACAGGACAAGCATCTCCATCAATAATAA  >  USA300TCH1516_ALE/754620‑754769

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑