Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	872029	872057	29	2 [1]	[1] 2	USA300HOU_RS04260	hypothetical protein

AATGTACGTATGACTTATTATCATAATGTAAGTCGCAAACAATAGGAAGTTATATTAAAAGGTCAAATCGACCGTTTTAATACTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTAAAAATTGATTTAAGAGGGTAGTTGTTTATTGCGAA  >  USA300TCH1516_ALE/872042‑872198                 |                                                                                                                                             aaTGTACGTATGACTTATTATCATAATGTAAGTCGCAAACAATAGGAAGTTATATTAAAAGGTCAAATCGACCGTTTTAATACTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTAAAAATTGATTTAAGAGGGt                  >  1:6758/1‑141 (MQ=255)                 attatCATAATGTAAGTCGCAAACAATAGGAAGTTATATTAAAAGGTCAAATCGACCGTTTTAATACTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTAAAAATTGATTTAAGAGGGTAGTTGTTTATTGCGaa  >  1:41894/1‑141 (MQ=255)                 |                                                                                                                                             AATGTACGTATGACTTATTATCATAATGTAAGTCGCAAACAATAGGAAGTTATATTAAAAGGTCAAATCGACCGTTTTAATACTTATAATAATAAAGAAATTTATGATTTGCAGTTTATCTAAAAATTGATTTAAGAGGGTAGTTGTTTATTGCGAA  >  USA300TCH1516_ALE/872042‑872198

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑