Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	886513	886577	65	2 [0]	[1] 2	USA300HOU_RS04345	hypothetical protein

TGCGATAAGTGTTTCGTTTTCATAACAGCCAAATACAATACATTTCGGTGAACCTTGATTTAAAATGTCATGTATTAAGGTGTCAGTCATTGTTTGACTATAATGTGAATCTTGAGTGAATTCTTCATTGACTGTCGAAACAAGTCTCTTATACTCATTAAAATCATTATTCGTTAATGTTTTAATTTCAATCATTACTGACC  >  USA300TCH1516_ALE/886516‑886718                                                               |                                                                                                                                             tGCGATAAGTGTTTCGTTTTCATAACAGCCAAATACAATACATTTCGGTGAACCTTGATTTAAAATGTCATGTATTAAGGTGTCAGTCATTGTTTGACTATAATGTGAATCTTGAGTGAATTCTTCATTGACTGTCGAAAc                                                                <  1:44786/141‑1 (MQ=255)                                                               aaaTGTCATGTATTAAGGTGTCAGTCATTGTTTGACTATAATGTGAATCTTGAGTGAATTCTTCATTGACTGTCGAAACAAGTCTCTTATACTCATTAAAATCATTATTCGTTAATGTTTTAATTTCAATCATTACTGAcc  >  2:19060/1‑141 (MQ=255)                                                               |                                                                                                                                             TGCGATAAGTGTTTCGTTTTCATAACAGCCAAATACAATACATTTCGGTGAACCTTGATTTAAAATGTCATGTATTAAGGTGTCAGTCATTGTTTGACTATAATGTGAATCTTGAGTGAATTCTTCATTGACTGTCGAAACAAGTCTCTTATACTCATTAAAATCATTATTCGTTAATGTTTTAATTTCAATCATTACTGACC  >  USA300TCH1516_ALE/886516‑886718

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑