Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1123016	1123152	137	2 [1]	[1] 2	cfiB_1	2‑oxoglutarate carboxylase small subunit

TAAGTGAAAATGAACAATTTGCGCGTCGTTGTGCAGAAGAAGGAATTAAATTTATTGGTCCTCATTTAGAACATTTAGATATGTTTGGAGATAAAGTTAAAGCTCGTACAACGGCTATCAAGGCAGATTTACCAGTTATTCCTGGTACAG  >  USA300TCH1516_ALE/1123144‑1123293          |                                                                                                                                             tAAGTGAAAATGAACAATTTGCGCGTCGTTGTGCAGAAGAAGGAATTAAATTTATTGGTCCTCATTTAGAACATTTAGATATGTTTGGAGATAAAGTTAAAGCTCGTACAACGGCTATCAAGGCAGATTTACCAGTTATTc           <  2:9288/141‑1 (MQ=255)          aTGAACAATTTGCGCGTCGTTGTGCAGAAGAAGGAATTAAATTTATTGGTCCTCATTTAGAACATTTAGATATGTTTGGAGATAAAGTTAAAGCTCGTACAACGGCTATCAAGGCAGATTTACCAGTTATTCCTGGTACAg  >  2:374/1‑141 (MQ=255)          |                                                                                                                                             TAAGTGAAAATGAACAATTTGCGCGTCGTTGTGCAGAAGAAGGAATTAAATTTATTGGTCCTCATTTAGAACATTTAGATATGTTTGGAGATAAAGTTAAAGCTCGTACAACGGCTATCAAGGCAGATTTACCAGTTATTCCTGGTACAG  >  USA300TCH1516_ALE/1123144‑1123293

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑