Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1137080	1137201	122	2 [1]	[0] 2	isdB	Iron‑regulated surface determinant protein B

AAATCAGTCATTTTTTCATTTGTTGGTTGTACATTTTGGAATTCAGTAATAGCTGATTTCACTTGCTCATCTAAAGCTTTCTTTGTATCCTCTAATTTCTTCTTGTACTCAGCCTTTAATTTTTCAGGAAGTTTATCTTGA  >  USA300TCH1516_ALE/1137202‑1137342 |                                                                                                                                             aaaTCAGTCATTTTTTTTTTTTTTTTTTGTACATTTTGGAATTCAGTAATAGCTGATTTCACTTGCTCATCTAAAGCTTTCTTCGTATCCTCTAATTTCTTCTTGTACTCAGCCTTTATTTTTTTATGTAGTTTATCTTGa  >  2:42283/1‑141 (MQ=255) aaaTCAGTCATTTTTTCATTTGTTGGTTGTACATTTTGGAATTCAGTAATAGCTGATTTCACTTGCTCATCTAAAGCTTTCTTTGTATCCTCTAATTTCTTCTTGTACTCAGCCTTTAATTTTTCAGGAAGTTTATCTTGa  >  1:4459/1‑141 (MQ=255) |                                                                                                                                             AAATCAGTCATTTTTTCATTTGTTGGTTGTACATTTTGGAATTCAGTAATAGCTGATTTCACTTGCTCATCTAAAGCTTTCTTTGTATCCTCTAATTTCTTCTTGTACTCAGCCTTTAATTTTTCAGGAAGTTTATCTTGA  >  USA300TCH1516_ALE/1137202‑1137342

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑