Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1264139	1264179	41	2 [1]	[1] 2	lytN_1	putative cell wall hydrolase LytN

TTATGAAAATGATATGATTTTTATTAGACCATTTAAAAAAGCATAATTTAAATCGAAGGCAGGACATTGAAATATGAAATTTTCAACTTTAAGTGAAGAAGAATTTACCAACTACACCAAAAAGCACTTCAAACATTATACACAGT  >  USA300TCH1516_ALE/1264175‑1264320      |                                                                                                                                             ttATGAAAATGATATGATTTTTATTAGACCATTTAAAAAAGCATAATTTAAATCGAAGGCAGGACATTGAAATATGAAATTTTCAACTTTAAGTGAAGAAGAATTTACCAACTACACCAAAAAGCACTTCAAACATTATac       <  2:49270/141‑1 (MQ=255)      aaaaTGATATGATTTTTATTAGACCATTTAAAAAAGCATAATTTAAATCGAAGGCAGGACATTGAAATATGAAATTTTCAACTTTAAGTGAAGAAGAATTTACCAACTACACCAAAAAGCACTTCAAACATTATACACAGt  >  1:24604/1‑141 (MQ=255)      |                                                                                                                                             TTATGAAAATGATATGATTTTTATTAGACCATTTAAAAAAGCATAATTTAAATCGAAGGCAGGACATTGAAATATGAAATTTTCAACTTTAAGTGAAGAAGAATTTACCAACTACACCAAAAAGCACTTCAAACATTATACACAGT  >  USA300TCH1516_ALE/1264175‑1264320

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑