Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1486225	1486274	50	2 [1]	[1] 2	ebh_1	Extracellular matrix‑binding protein ebh

ATTCAAGTTGTTTTTCGCAGTTGTCTTAGCTTGAGCTAAGTTTCGCGCACCATTTAATGCCTGTTCTTTAGTTGTCACTTGTGATGTTACTTGCGTAATAGTATTTGGTTCCATCGTTGGGTTCGATGTTTGATTAATGATTGCTTTTGCTGCAGTAACT  >  USA300TCH1516_ALE/1486250‑1486409                          |                                                                                                                                       aTTCAAGTTGTTTTTCGCAGTTGTCTTAGCTTGAGCTAAGTTTCGCGCACCATTTAATGCCTGTTCTTTAGTTGTCACTTGTGATGTTACTTGCGTAATAGTATTTGGTTCCATCTTTGGGTTCGATGTTTGATTAATGAt                     <  2:19572/141‑1 (MQ=255)                    ttttttttAGCTTGAGCTAAGTTTCGCGCACCATTTAATGCCTGTTCTTTAGTTGTCACTTGTGATGTTACTTGCGTAGTAGTATTTGGTTCCATCGTTGGGTTCGATGTTTGATTAATGATTGCTTTTGCTGCAGTAACt  >  2:34503/7‑141 (MQ=255)                          |                                                                                                                                       ATTCAAGTTGTTTTTCGCAGTTGTCTTAGCTTGAGCTAAGTTTCGCGCACCATTTAATGCCTGTTCTTTAGTTGTCACTTGTGATGTTACTTGCGTAATAGTATTTGGTTCCATCGTTGGGTTCGATGTTTGATTAATGATTGCTTTTGCTGCAGTAACT  >  USA300TCH1516_ALE/1486250‑1486409

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑