Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1637361	1637449	89	2 [0]	[1] 2	recN	DNA repair protein RecN

TCTTAACTCCCTAGCGACTATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCATTTATTTCTTCTCGTAACTGCGATGTACTTTGTTCATAGTTTTCAATTTTATTGATTTCATTATTAAGCTTTTCTTGATATGCGATTAATTCTGA  >  USA300TCH1516_ALE/1637420‑1637590                               |                                                                                                                                             tctTAACTCCCTAGCGACTATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCATTTATTTCTTCTCGTAACTGCGATGTACTTTGTTCATAGTTTTCAATTTTATTGATTTCattatt                                >  2:39831/1‑141 (MQ=255)                               ctTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCATTTATTTCTTCTCGTAACTGCGATGTACTTTGTTCATAGTTTTCAATTTTATTGATTTCATTATTAAGCTTTTCTTGATATGCGATTAATTCTGa  >  2:18464/1‑141 (MQ=255)                               |                                                                                                                                             TCTTAACTCCCTAGCGACTATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCATTTATTTCTTCTCGTAACTGCGATGTACTTTGTTCATAGTTTTCAATTTTATTGATTTCATTATTAAGCTTTTCTTGATATGCGATTAATTCTGA  >  USA300TCH1516_ALE/1637420‑1637590

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑