Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1686541	1686674	134	2 [1]	[1] 2	mtaB	Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB

ATTTCCAACACCATTAATTGGTTGGCGTTCTTTACGGAATTCGTCAATGTAACCTAATAGTTTATGTCTATCTTGTGTACCAACTACTACATCGACACCAGGAATTTCCATAATTTCAGCTGATGAAGTTTGCGCATAACAACCTGTTACACAGATTACAGCAT  >  USA300TCH1516_ALE/1686652‑1686815                        |                                                                                                                                             atTTCCAACACCATTAATTGGTTGGCGTTCTTTACGGAATTCGTCAATGTAACCTAATAGTTTATGTCTATCTTGTGTACCAACTACTACATCGACACCAGGAATTTCCATAATTTCAGCTGATGAAGTTTGCGCATaaca                         <  2:12956/141‑1 (MQ=255)                        ggCGTTCTCTACGGAATTCGTCAATGTAACCGAATAGTTTATGTCTATCTTGTGTACCAACTACTACATCGACACCAGGAATTTCCATAATTTCAGCTGATGAAGTTTGCGCATAACAACCTGTTACACAGATTACAGCAt  <  1:18812/141‑1 (MQ=255)                        |                                                                                                                                             ATTTCCAACACCATTAATTGGTTGGCGTTCTTTACGGAATTCGTCAATGTAACCTAATAGTTTATGTCTATCTTGTGTACCAACTACTACATCGACACCAGGAATTTCCATAATTTCAGCTGATGAAGTTTGCGCATAACAACCTGTTACACAGATTACAGCAT  >  USA300TCH1516_ALE/1686652‑1686815

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑