Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1738464	1738704	241	2 [1]	[1] 2	[hisS]	[hisS]

CTTTAATTTTACGCTGTAAATAGTCTTTATCTGCTTTAATACCATTATGTCTCAAATGATTTAATAGCTTCACAGCATATCGATCTGCTTGATCACCCATTGTAACAATGAATAAATCTAAGTTTTCTTCAATATCTAATTCGATACCTTCTTCTTCAAGTGCAAGCAATAATCGTTCTATACTTAGCGCAAAACCAATACCTGTTTCACTTGG  >  USA300TCH1516_ALE/1738632‑1738845                                                                          |                                                                                                                                             cTTTAATTTTACGCTGTAAATAGTCTTTATCTGCTTTAATACCATTATGTCTCAAATGATTTAATAGCTTCACAGCATATCGATCTGCTTGATCACCCATTGTAACAATGAATAAATCTAAGTTTTCTTCAATATCTAAtt                                                                           >  1:34266/1‑141 (MQ=255)                                                                          aGCATATCGATCTGCTTGATCACCCATTGTAACAATGAATAAATCTAAGTTTTCTTCAATATCTAATTCGATACCTTCTTCTTCAAGTGCAAGCAATAATCGTTCTATACTTAGCGCAAAACCAATACCTGTTTCACTTgg  <  2:34266/141‑1 (MQ=255)                                                                          |                                                                                                                                             CTTTAATTTTACGCTGTAAATAGTCTTTATCTGCTTTAATACCATTATGTCTCAAATGATTTAATAGCTTCACAGCATATCGATCTGCTTGATCACCCATTGTAACAATGAATAAATCTAAGTTTTCTTCAATATCTAATTCGATACCTTCTTCTTCAAGTGCAAGCAATAATCGTTCTATACTTAGCGCAAAACCAATACCTGTTTCACTTGG  >  USA300TCH1516_ALE/1738632‑1738845

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑