Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1794518	1794554	37	2 [1]	[1] 2	USA300HOU_RS08960	hypothetical protein

ACATATTGCAATAAGTAAGGAATATAAAGTGATTTGTGTTTTACGATCATTAATAGACAAATAAATACCTACAAATATCGAAAACGCAAAGTAACCACATACAATTACGTTCACAAAACCAACCAATCCAATATCTGTATTTTTATTT  >  USA300TCH1516_ALE/1794548‑1794695        |                                                                                                                                             acaTATTGCAATAAGTAAGGAATATAAAGTGATTTGTGTTTTACGATCATTAATAGACAAATAAATACCTACAAATATCGAAAACGCAAAGTAACCACATACAATTACGTTCACAAACCCAACCAATCCAATATCTGTAtt         <  2:34916/141‑1 (MQ=255)        gCAATAAGTAAGGAATATAAAGTGATTTGTGTTTTACGATCATTAATAGACAAATAAATACCTACAAATATCGAAAACGCAAAGTAACCACATACAATTACGTTCACAAAACCAACCAATCCAATATCTGTATTtttattt  >  2:61105/1‑141 (MQ=255)        |                                                                                                                                             ACATATTGCAATAAGTAAGGAATATAAAGTGATTTGTGTTTTACGATCATTAATAGACAAATAAATACCTACAAATATCGAAAACGCAAAGTAACCACATACAATTACGTTCACAAAACCAACCAATCCAATATCTGTATTTTTATTT  >  USA300TCH1516_ALE/1794548‑1794695

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑