Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1844887	1845007	121	2 [1]	[1] 2	isdH	Iron‑regulated surface determinant protein H

TCGGCAGATGTTCAGTTGTTTTTTTGTCAGTAACTTTGTCTGTATTATTATAATTTTGTTTCACTACGTCAAGCTTTGCTGCTTTTCCAGTATGATTATTTTTATCGGCAATATGATTCAGCTGTATGACTTTGTCTTTATTT  >  USA300TCH1516_ALE/1845006‑1845148   |                                                                                                                                             tCGGCAGATGTTCAGTTGTTTTTTTGTCAGTAACTTTGTCTGTATTATTATAATTTTGTTTCACTACGTCAAGCTTTGCTGCTTTTCCAGTATGATTATTTTTATCGGCAATATGATTCAGCTGTATGACTTTGTCtttat    >  1:27250/1‑141 (MQ=255)   ggCAGATGTTCAGTTGTTTTTTTGTCAGTAACTTTGTCTGTATTATTATAATTTTGTTTCACTACGTCAAGCTTTGCTGCTTTTCCAGTATGATTATTTTTATCGGCAATATGATTCAGCTGTATGACTTTGTCtttattt  >  1:57320/1‑141 (MQ=255)   |                                                                                                                                             TCGGCAGATGTTCAGTTGTTTTTTTGTCAGTAACTTTGTCTGTATTATTATAATTTTGTTTCACTACGTCAAGCTTTGCTGCTTTTCCAGTATGATTATTTTTATCGGCAATATGATTCAGCTGTATGACTTTGTCTTTATTT  >  USA300TCH1516_ALE/1845006‑1845148

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑