Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1889376	1889450	75	2 [1]	[1] 2	mdtH	Multidrug resistance protein MdtH

AATCATTCCGCCACCAAACCCTAACATTACAAGCCATACAGCATACCAAGGCCACCCGTGAAAGAAATTAAGTAGCGTTGTACTACAAAGACAAGTGAAAGTTCCAATTAAAATCGTCTTGTATCCACCTAATTTATCAAATAGTGAACCACCT  >  USA300TCH1516_ALE/1889431‑1889584                     |                                                                                                                                      aatCATTCCGCCACCAAACCCTAACATTACAAGCCATACAGCATACCAAGGCCACCCGTGAAAGAAATTAAGTAGCGTTGTACTACAAAGACAAGTGAAAGTTCCAATTAAAATCGTCTTGTATCCACCTAATTTATCaaa               >  1:24568/1‑141 (MQ=255)              ccgcacacTAACATTACAGGCCATACAGCATACCAAGGCCACCCGTGAAAGTAATTAAGTAGCGTTGTACTACAAAGACAAGTGAAAGTTCCAATTACAATCGTCTTGTATCCACCTAATTTATCAAATAGTGAACCACCt  <  2:41772/134‑1 (MQ=255)                     |                                                                                                                                      AATCATTCCGCCACCAAACCCTAACATTACAAGCCATACAGCATACCAAGGCCACCCGTGAAAGAAATTAAGTAGCGTTGTACTACAAAGACAAGTGAAAGTTCCAATTAAAATCGTCTTGTATCCACCTAATTTATCAAATAGTGAACCACCT  >  USA300TCH1516_ALE/1889431‑1889584

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑