Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1892499	1892554	56	2 [1]	[1] 2	USA300TCH1516_01749	hypothetical protein

TTAAATCTATTTCTTCTATTGTTAAATCGCTATCTCCATCTTCTTTTATCTCTGGTATTATTTTTTCTTCAACTAAGTCACGATATAGTGTTTTTGAATTCTCGTTCAATTTCGATTCGTGATTTTGAATACTTTCTTCCGCACCAATGTATA  >  USA300TCH1516_ALE/1892543‑1892695             |                                                                                                                                             ttAAATCTATTTCTTCTATTGTTAAATCGCTATCTCCATCTTCTTTTATCTCTGGTATTATTTTTTCTTCAACTAAGTCACGATATAGTGTTTTTGAATTCTCGTTCAATTTCGATTCGTGATTTTGAATACTTTCTTCCg              >  2:57849/1‑141 (MQ=40)             cttctATTGTTAAATCGCTATCTCCATCTTCTTTTATCTCTGGTATTATTTTTTCTTCAACTAAGTCACGATATAGTGTTTTTGAATTCTCGTTCAATTTCGATTCGTGATTTTGAATACTTTCTTCCGCACCAATGtata  <  1:25231/141‑1 (MQ=255)             |                                                                                                                                             TTAAATCTATTTCTTCTATTGTTAAATCGCTATCTCCATCTTCTTTTATCTCTGGTATTATTTTTTCTTCAACTAAGTCACGATATAGTGTTTTTGAATTCTCGTTCAATTTCGATTCGTGATTTTGAATACTTTCTTCCGCACCAATGTATA  >  USA300TCH1516_ALE/1892543‑1892695

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑