Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1986540	1986603	64	3 [1]	[0] 2	[USA300HOU_RS09895]	[USA300HOU_RS09895]

CAGCACTAACAATTGTCGTATATGGATTTAGAGCAACAAGCGTACCTAAAACTCCTGTTAAACTCGCATAAAACCCATCAAGTGTATAATACAATATTGCTGTTATTAATAAACAACAAATTACACTGATTACAATACCTG  >  USA300TCH1516_ALE/1986604‑1986744 |                                                                                                                                             cAGCACTAACAATTGTCGTATATGGATTTAGAGCAACAAGCGTACCTAAAACTCCTGTTAAACTCGCATAAAACCCATCAAGTGTATAATACAATATTGCTGTTATTAATAAACAACAAATTACACTGATTACAATACCtg  >  1:5491/1‑141 (MQ=255) cAGCACTAACAATTGTCGTATATGGATTTAGAGCAACAAGCGTACCTAAAACTCCTGTTAAACTCGCATAAAACCCATCAAGTGTATAATACAATATTGCTGTTATTAATAAACAACAAATTACACTGATTACAATACCtg  >  1:5500/1‑141 (MQ=255) |                                                                                                                                             CAGCACTAACAATTGTCGTATATGGATTTAGAGCAACAAGCGTACCTAAAACTCCTGTTAAACTCGCATAAAACCCATCAAGTGTATAATACAATATTGCTGTTATTAATAAACAACAAATTACACTGATTACAATACCTG  >  USA300TCH1516_ALE/1986604‑1986744

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑