Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2557742	2557771	30	2 [0]	[1] 2	[mapZ]	[mapZ]

GATAAATACCGTGATTCATATCAATACGACAATCAAAACCAAAATCATCGTCGTCAATCTGAAGACGCATCGTATAGACAACAATATGCTAAAGGCGATCCTGAAGAACACCCGGAACGATACTATAATGGTAGAGATTATCGAAGA  >  USA300TCH1516_ALE/2557766‑2557912       |                                                                                                                                             gATAAATACCGTGATTCATATCAATACGACAATCAAAACCAAAATCATCGTCGTCAATCTGAAGACGCATCGTATAGACAACAATATGCTAAAGGCGATCCTGAAGAACACCCGGAACGATACTATAATGGTAGAGATTAt        <  2:10279/141‑1 (MQ=255)       tACCGTGATTCATATCAATACGACAATCAAAACCAAAATCATCGTCGTCAATCTGAAGACGCATCGTATAGACAACAATATGCTAAAGGCGATCCTGAAGAACACCCGGAACGATACTATAATGGTAGAGATTATCGAaga  <  1:11273/141‑1 (MQ=255)       |                                                                                                                                             GATAAATACCGTGATTCATATCAATACGACAATCAAAACCAAAATCATCGTCGTCAATCTGAAGACGCATCGTATAGACAACAATATGCTAAAGGCGATCCTGAAGAACACCCGGAACGATACTATAATGGTAGAGATTATCGAAGA  >  USA300TCH1516_ALE/2557766‑2557912

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑