| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2292528 | 46 (1.710) | 4 (0.160) | 3/264 | 3.2 | 8.6% | noncoding (66/76 nt) | USA300TCH1516_02174 | tRNA‑Val |
| ? | USA300TCH1516_ALE | = 2292586 | 42 (1.660) | noncoding (8/76 nt) | USA300TCH1516_02174 | tRNA‑Val | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TGGCTATAGCCCAATATATAGATGGTGGAGGGGGGCAGATTCGAACTGCCGAACCCGAAGGAGCGGATTTACAGTCCGCCGCGTTTAGCCACTTCGCTACCCCTCCAGCTTATTCATATAATTTAATAATCAAAATGGTGGAGAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2292383‑2292528‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggagaatTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGAGGGTCGGCGGTTCGAACCCGTCATTCTCCACCATTTTGATTATTAAATTATATGAATAAGCTGGAGGGGTAGCGAAGTGGCTAAACGCGGCGGACTG < USA300TCH1516_ALE/2292586‑2292454 TGGCTATAGCCCAATATATAGATGGTGGAGGGGGGCAGATTCGATCTGCCGAACCCGAAGGAGCGGATTTACAGTCCGCCGCGTTTAGCCACTTCGCTACCCCTCCAGCTTATTCATATAATTTAATAATCAAAATGGTGG < 1:29776/141‑1TGGCTATAGCCCAATATATAGATGGTGGAGGGGGGCAGATTCGAACTGCCGAACCCGAAGGAGCGGATTTACAGTCCGCCGCGTTTAGCCACTTCGCTACCCCTCCAGCTTATTCATATAATTTAATAATCAAAATGGTGG > 1:51532/1‑141TGGCTATAGCCCAATATATAGATGGTGGAGGGGGGCAGATTCGAACTGCCGAACCCGAAGGAGCGGATTTACAGTCCGCCGCGTTTAGCCACTTCGCTACCCCTCCAGCTTATTCATATAATTTAATAATCAAAATGGTGG < 2:179602/141‑1 CTATAGCCCAATATATAGATGGTGGAGGGGGGCAGATTCGAACTGCCGAACCCGAAGGAGCGGATTTACAGTCCGCCGCGTTTAGCCACTTCGCTCCTCTTCCAGCTTATTCATATAATTTAATAATCAAAATGGTGGAGA < 1:138256/141‑1 ATATAGATGGTGGAGGGGGGCAGATTCGAACTGCCGAACCCGAAGGAGCGGATTTACAGTCCGCCGCGTTTAGCCACTTCGCTACCCCTCCAGCTTATTCATATAATTTAATAATCAAAATGGTGGAGAATTAGCTCAGCT > 1:19715/1‑141 CCGCCGCGTTTAGCCACTTCGCTACCCCTCCAGCTTATTCATATAATTTAATAATCAAAATGGTGGAGAATTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGAGGGTCGGCGGTTCGAACCCGTCATTCTCCACCAT < 2:19715/141‑1 TAGCCACTTCGCTACCCCTCCAGCTTATTCATATAATTTAATAATCAAAATGGTGGAGAATTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGAGGGTCGGCGGTTCGAACCCGTCATTCTCCACCATTTTGATTATT < 2:105574/141‑1 TAGCCACTTCGCTACCCCTCCAGCTTATTCATATAATTTAATAATCAAAATGGTGGAAAAATATCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGAGGGTCGGCGGTTCGAACCCGTCATTCTCCACCATTTTGATTATT < 1:150100/141‑1 TGGAGAATTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGAGGGTCGGCGGTTCGAACCCGTCATTCTCCACCATTTTGATTATTAAATTATATGAATAAGCTGGAGGGGTAGCGAAGTGGCTAAACGCGGCGGACTG < 1:66554/141‑1 TGGAGAATTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGAGGGTCGGCGGTTCGAACCCGTCATTCTCCACCATTTTGATTATTAAATTATATGAATAAGCTGGAGGGGTAGCGAAGTGGCTAAACGCGGCGGACTG < 2:225008/141‑1 TGGCTATAGCCCAATATATAGATGGTGGAGGGGGGCAGATTCGAACTGCCGAACCCGAAGGAGCGGATTTACAGTCCGCCGCGTTTAGCCACTTCGCTACCCCTCCAGCTTATTCATATAATTTAATAATCAAAATGGTGGAGAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2292383‑2292528‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggagaatTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGAGGGTCGGCGGTTCGAACCCGTCATTCTCCACCATTTTGATTATTAAATTATATGAATAAGCTGGAGGGGTAGCGAAGTGGCTAAACGCGGCGGACTG < USA300TCH1516_ALE/2292586‑2292454 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |