New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2292528	46 (1.710)	4 (0.160)	3/264	3.2	8.6%	noncoding (66/76 nt)	USA300TCH1516_02174	tRNA‑Val
	?	USA300TCH1516_ALE	= 2292586	42 (1.660)					noncoding (8/76 nt)	USA300TCH1516_02174	tRNA‑Val
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CAGTCCGCCGCGTTTAGCCACTTCGCTACCCCTCCAGCTTATTCATATAATTTAATAATCAAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCAAAATAATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCTCCACAGGTAGGACTCGAACCTACGACCGATCGGTTAACAGCCGA  >  USA300TCH1516_ALE/2292454‑2292722                                                                                                                                     |                                                                                                                                         cAGTCCGCCGCGTTTAGCCACTTCGCTACCCCTCCAGCTTATTCATATAATTTAATAATCAAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCa                                                                                                                                  >  2:225008/1‑141 (MQ=255) cAGTCCGCCGCGTTTAGCCACTTCGCTACCCCTCCAGCTTATTCATATAATTTAATAATCAAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCa                                                                                                                                  >  1:66554/1‑141 (MQ=255)    tCCGCCGCGTTTAGCCACTTCGCTACCCCTCCAGCTTATTCATATAATTTAATAATCAAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCaaaa                                                                                                                               >  1:201683/1‑141 (MQ=255)         cgcgTTTAGCCACTTCGCTACCCCTCCAGCTTATTCATATAATTTAATAATCAAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCAAAATAATg                                                                                                                          >  1:81051/1‑141 (MQ=255)                       tCGCTTCCCCTCCAGCTTATTCATATAATTTAATAATCAAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCAAAATAATGACTCCTACGGGACt                                                                                                            <  2:179710/141‑1 (MQ=255)                       tCGCTACCCCTCCAGCTTATTCATATAATTTAATAATCAAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCAAAATAATGACTCCTACGGGACt                                                                                                            <  2:50845/141‑1 (MQ=255)                           tACCCCTCCAGCTTATTCATATAATTTAATAATCAAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCAAAATAATGACTCCTACGGGACTCGaa                                                                                                        >  2:11357/1‑141 (MQ=255)                           tACCCCTCCAGCTTATTCATATAATTTAATAATCAAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCAAAATAATGACTCCTACGGGACTCGaa                                                                                                        >  2:203832/1‑141 (MQ=255)                             ccccTCCAGTCTCTTCATATAATTTACTACTCCAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGCAAGGCAGACGCCCTCCCAGCTGAGCTAATCCCCCAACATTATGACTCCTACGTGACTCGAAcc                                                                                                      <  2:242869/141‑1 (MQ=18)                             ccccTCCAGCTTATTCATATAATTTAATAATCAAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCAAAATAATGACTCCTACGGGACTCGAAcc                                                                                                      <  2:286449/141‑1 (MQ=255)                                      cTTATTCATATAATTTAATAATCAAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCAAAATAATGACTCCTACGGGACTCGAACCCGTGTTAcc                                                                                             >  2:196368/1‑141 (MQ=255)                                      cTTATTCATATAATTTAATAATCAAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCAAAATAATGACTCCTACGGGACTCGAACCCGTGTTAcc                                                                                             >  2:27039/1‑141 (MQ=255)                                        tATTCATATAATTTAATAATCAAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCAAAATAATGACTCCTACGGGACTCGAACCCGTGTTAccgc                                                                                           <  2:94354/141‑1 (MQ=255)                                            cATATAATTTAATAATCAAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCAAAATAATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTg                                                                                       >  2:179129/1‑141 (MQ=255)                                            cATATAATTTAATAATCAAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCAAAATAATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTg                                                                                       >  1:51253/1‑141 (MQ=255)                                                taATTTAATAATCAAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCAAAATAATGACTCCTACGGGACTCGAACCCGTGTTAccgccctttcac                                                                                   <  1:72779/141‑8 (MQ=255)                                                taATTTAATAATCAAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCAAAATAATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAg                                                                                   <  2:174270/141‑1 (MQ=255)                                                taATTTAATAATCAAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCAAAATAATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAg                                                                                   <  2:149976/141‑1 (MQ=255)                                                  aTTTAATAATCAAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGTGCTAATTCGCCAAAATAATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAggg                                                                                 >  1:84668/1‑141 (MQ=255)                                                      aataatCAAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCAAAATAATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGgt                                                                             >  2:250340/1‑141 (MQ=255)                                                         aatCAAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCAAAATAATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTc                                                                          >  2:149744/1‑141 (MQ=255)                                                               aaTGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCAAAATAATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAAcc                                                                    >  1:281273/1‑141 (MQ=255)                                                                    tggAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCAAAATAATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTg                                                               >  2:34817/1‑141 (MQ=255)                                                                           tGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCAAAATAATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAgg                                                        >  2:167302/1‑141 (MQ=255)                                                                               gggTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCAAAATAATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGcc                                                    <  1:11357/141‑1 (MQ=255)                                                                               gggTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCAAAATAATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGcc                                                    <  1:203832/141‑1 (MQ=255)                                                                                   tCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCAAAATAATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATgg                                                <  2:267973/141‑1 (MQ=255)                                                                                     gAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCAAAATAATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCt                                              <  1:229724/141‑1 (MQ=255)                                                                                      aaCCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCAAAATAATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCTc                                             >  2:62461/1‑141 (MQ=255)                                                                                      aaCCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCAAAATAATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCACATGAAAAAGGAGACATGGCTc                                             <  2:258410/141‑1 (MQ=25)                                                                                           ccgACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCAAAATAATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCTCCACAg                                        <  1:183252/141‑1 (MQ=255)                                                                                               cccTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCAAAATAATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCTCCACAGGTAg                                    >  2:125363/1‑141 (MQ=255)                                                                                               cccTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCAAAATAAGGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCTCCACAGGTAg                                    >  1:146168/1‑141 (MQ=255)                                                                                                ccTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCAAAATAATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCTCCACAGGTAgg                                   >  1:60959/1‑141 (MQ=255)                                                                                                    tGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCAAAATAATGACTCCTCCGGGACTCGCACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCTCCACAGGTAGGACTc                               <  1:50175/141‑1 (MQ=255)                                                                                                         gTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCAAAATAATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCTCCACAGGTAGGACTCGAAcc                          <  2:175912/141‑1 (MQ=255)                                                                                                           aaGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCAAAATAATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCTCCACAGGTAGGACTCGAACCTa                        <  1:245354/141‑1 (MQ=255)                                                                                                            aGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCAAAATAATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCTCCACAGGTAGGACTCGAACCTAc                       <  2:238476/141‑1 (MQ=255)                                                                                                                 gATGCTCTCCCAGCTGAGCTAATTCTCCAAAATAATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCTCCACAGGTAGGACTCGAACCTACGACCg                  <  2:51532/141‑1 (MQ=255)                                                                                                                     ctctCCCAGCTGAGCTAATTCTCCAAAATAATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCTCCACAGGTAGGACTCGAACCTACGACCGATCg              <  1:225008/141‑1 (MQ=255)                                                                                                                       ctcCCAGCTGAGCTAATTCTCCAAAATAATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCTCCACAGGTAGGACTCGAACCTACGACCGATCGGt            >  1:120109/1‑141 (MQ=255)                                                                                                                        tcCCAGCTGAGCTAATTCTCCAAAATAATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCTCCACAGGTAGGACTCGAACCTACGACCGATCGGtt           <  1:167302/141‑1 (MQ=255)                                                                                                                             gCTGAGCTAATTCTCCAAAATAATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCTCCACAGGTAGGACTCGAACCTACGACCGATCGGTTAACAg      <  2:81051/141‑1 (MQ=255)                                                                                                                                 aGCTAATTCTCCAAAATAATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCTCCACAGGTAGGACTCGAACCTACGACCGATCGGTTAACAGCCGa  >  2:149371/1‑141 (MQ=255)                                                                                                                                     |                                                                                                                                         CAGTCCGCCGCGTTTAGCCACTTCGCTACCCCTCCAGCTTATTCATATAATTTAATAATCAAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCAAAATAATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCTCCACAGGTAGGACTCGAACCTACGACCGATCGGTTAACAGCCGA  >  USA300TCH1516_ALE/2292454‑2292722

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.