BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012417	2664 =	639 (1.170)	5 (0.010)	5/272	42.7	0.69%	coding (11/582 nt)	USA300HOU_RS14900	hypothetical protein
*	?	NC_012417	2715 =	828 (1.560)	5 (0.010)	5/272	42.7	0.69%	intergenic (‑41/–)	USA300HOU_RS14900/–	hypothetical protein/–
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 658 total aligned reads displayed.

AAGTTTCAACGTTTTTATCTGCAATGTTATTTTTGTTTTGGGCTTGAGCTTCTTTGAAATTAAAATCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAA  >  NC_012417/2524‑2804

    ttCAACGTTTTTATCTGCAATGTTATTTTTGTTTTGGGCTTGAGCTTCTTTGAAATTAAAATCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGc                                                                                                                                          <  2:238775/141‑1 (MQ=255)

     tCAACGTTTTTATCTGCAATGTTATTTTTGTTTTGGGCTTGAGCTTCTTTGAAATTAAAATCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGca                                                                                                                                         >  1:259645/1‑141 (MQ=255)

      cAACGTTTTTATCTGCAATGTTATTTTTGTTTTGGGCTTGAGCTTCTTTGAAATTAAAATCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGcat                                                                                                                                        <  2:46277/141‑1 (MQ=255)

        aCGTTTTTATCTGCAATGTTATTTTTGTTTTGGGCTTGAGCTTCTTTGAAATTAAAATCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGcattc                                                                                                                                      >  1:79443/1‑141 (MQ=255)

        aCGTTTTTATCTGCAATGTTATTTTTGTTTTGGGCTTGAGCTTCTTTGAAATTAAAATCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGcattc                                                                                                                                      >  2:198486/1‑141 (MQ=255)

        aCGTTTTTATCTGCAATGTTATTTTTGTTTTGGGCTTGAGCTTCTTTGAAATTAAAATCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGcattc                                                                                                                                      <  1:154663/141‑1 (MQ=255)

            ttttATCTGCAATGTTATTTTTTTTTTTTTTTTGAGCTTCTTTGAAATTAAAATCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAACATCTTTCTTTGTGATATACTGTTTTGAATTGcattcattt                                                                                                                                  >  2:286257/1‑140 (MQ=255)

             tttATCTGCAATGTTATNTTTGTTTTGGGCTTGNGCTNCTTTGAAATTAAAATCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGt                                                                                                                                 >  1:228571/1‑141 (MQ=255)

                 tCTGCAATGTTATTTTTGTTTTGGGCTTGAGCTTCTTTGAAATTAAAATCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAAt                                                                                                                             >  1:190690/1‑141 (MQ=255)

                    gCAATGTTATTTTTGTTTTGGGCTTGAGCTTCTTTGAAATTAAAATCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGcc                                                                                                                          <  1:3334/141‑1 (MQ=255)

                    ccAATGTTATTTTTGTTTTGGGCTTGATCTTCTTTGAAATTAAAATCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGcc                                                                                                                          <  2:182920/140‑1 (MQ=255)

                      aaTGTTATTTTTGTTTTGGGCTTGAGCTTCTTTGAAATTAAAATCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGcccc                                                                                                                        <  2:211849/141‑1 (MQ=255)

                        tGTTATTNTTGTTTTGGGCTTGAGCTTCTTTGAAATTAAAATCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCt                                                                                                                      <  2:216264/141‑1 (MQ=255)

                          ttATTTTTGTTTTGGGCTTGAGCTTCTTTGAAATTAAAATCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCttg                                                                                                                    >  2:135672/1‑141 (MQ=255)

                           tATTTTTGTTTTGGGCTTGAGCTTCTTTGAAATGAAAATCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCttgt                                                                                                                   >  1:149368/1‑141 (MQ=255)

                            aTTTTTGTTTTGGGCTTGAGCTTCTTTGAAATTAAAATCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCttgtt                                                                                                                  >  2:219045/1‑141 (MQ=255)

                              ttttgttttgGGCTTGAGCTTCTTTGAAATTAAAATCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCttgtttt                                                                                                                >  2:244047/1‑141 (MQ=255)

                                 tgttttgGGCTTGAGCTTCTTTGAAATTAAAATCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCttgttttttt                                                                                                             >  2:158447/1‑141 (MQ=255)

                                  gttttgGGCTTGAGCTTCTTTGAAATTAAAATCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTa                                                                                                            >  1:99751/1‑141 (MQ=255)

                                     ttgGGCTTGAGCTTCTTTGAAATTAAAATCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTAttt                                                                                                         >  1:171608/1‑141 (MQ=255)

                                        ggCTTGAGCTTCTTTGAAATTAAAATCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTaaa                                                                                                      <  2:55860/141‑1 (MQ=255)

                                        ggCTTGAGCTTCTTTGAAATTAAAATCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTaaa                                                                                                      <  2:191739/141‑1 (MQ=255)

                                        ggCTTGAACTTCTTTGAAATTAAAATCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTaaa                                                                                                      <  2:150333/141‑1 (MQ=255)

                                          cTTGAGCTTCTTTGAAATTAAAATCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATg                                                                                                    <  1:59153/141‑1 (MQ=255)

                                           ttGAGCTTCTTTGAAATTAAAATCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGa                                                                                                   >  2:272054/1‑141 (MQ=255)

                                            tGAGCTTCTTTGAAATTAAAATCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGaa                                                                                                  >  2:277175/1‑141 (MQ=255)

                                             gAGCTTCTTTGAAATTAAAATCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAAt                                                                                                 <  1:141306/141‑1 (MQ=255)

                                                cttcttTGCAATTAAAATCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCa                                                                                              >  2:14667/1‑141 (MQ=255)

                                                cttcttTGAAATTAAAATCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCa                                                                                              >  2:205588/1‑141 (MQ=255)

                                                  tcttTGAAATTAAAATCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCaat                                                                                            >  1:16736/1‑141 (MQ=255)

                                                  tcttTGAAATTAAAATCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCaat                                                                                            >  1:23819/1‑141 (MQ=255)

                                                  tcttTGAAATTAAAATCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCaat                                                                                            >  1:67724/1‑141 (MQ=255)

                                                  tcttTGAAATTAAAATCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCaat                                                                                            >  2:153278/1‑141 (MQ=255)

                                                    tttGAAATTAAAATCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCaatat                                                                                          >  1:160246/1‑141 (MQ=255)

                                                      tGAAATTAAAATCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCaatataa                                                                                        >  2:107546/1‑141 (MQ=255)

                                                         aaTTAAAATCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCaatataatat                                                                                     <  2:39179/141‑1 (MQ=255)

                                                          aTTAAAATCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATAtt                                                                                    <  1:100796/141‑1 (MQ=255)

                                                          aTTAAAATCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATAtt                                                                                    <  1:48345/141‑1 (MQ=255)

                                                           ttAAAATCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCGTGTGATGTTATTTAAATGAATTCAATATAATATTa                                                                                   >  1:128101/1‑141 (MQ=255)

                                                               aaTCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACat                                                                               >  2:52160/1‑141 (MQ=255)

                                                                 tCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACatat                                                                             >  1:71175/1‑141 (MQ=255)

                                                                       aCCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAAc                                                                       >  1:181119/1‑141 (MQ=255)

                                                                       aCCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAAc                                                                       >  1:82300/1‑141 (MQ=255)

                                                                       aCCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAACATAATATTAACCTATAAAAAc                                                                       >  2:173787/1‑141 (MQ=255)

                                                                        ccATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACa                                                                      <  2:260937/141‑1 (MQ=255)

                                                                        ccATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACa                                                                      >  2:232248/1‑141 (MQ=255)

                                                                        aaaTTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCGCTTGTTTTGTTATTTAAATGAATTTAATATAATATAAACATATaaaaaga                                                                      >  1:113084/3‑139 (MQ=255)

                                                                          aTTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACaaa                                                                    <  1:119993/141‑1 (MQ=255)

                                                                            tGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCACCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAgg                                                                  >  1:201725/1‑141 (MQ=255)

                                                                               aaGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGt                                                               >  2:280189/1‑141 (MQ=255)

                                                                                aGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGtt                                                              >  2:168895/1‑141 (MQ=255)

                                                                                  tATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTa                                                            >  1:220504/1‑141 (MQ=255)

                                                                                   aTGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTaa                                                           <  1:104536/141‑1 (MQ=255)

                                                                                   aTGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTaa                                                           >  1:275929/1‑141 (MQ=255)

                                                                                     ggTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAata                                                         >  2:179581/1‑141 (MQ=255)

                                                                                      gTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAatat                                                        >  1:184832/1‑141 (MQ=255)

                                                                                      gTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAatat                                                        >  2:130866/1‑141 (MQ=255)

                                                                                         aaaaTACTTAAAGATACTACTAACATCTTTCTTAGTGATATACTGTTTTGCATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTAGTTAAATGAATTCAATATACTATTAACATATAAAAACAAAGGAGTTTAATATGaa                                                     >  2:228661/1‑141 (MQ=255)

                                                                                          aaaTACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAAt                                                    >  1:213288/1‑141 (MQ=255)

                                                                                             tACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAg                                                 >  2:67854/1‑141 (MQ=255)

                                                                                             tACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAg                                                 >  1:132411/1‑141 (MQ=255)

                                                                                             tACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAg                                                 >  2:164073/1‑141 (MQ=255)

                                                                                              aCTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGt                                                >  1:74307/1‑141 (MQ=255)

                                                                                               cTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGtt                                               >  1:265802/1‑141 (MQ=255)

                                                                                                 tAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGtttt                                             <  2:62371/141‑1 (MQ=255)

                                                                                                   aaGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGtttttt                                           >  1:10865/1‑141 (MQ=255)

                                                                                                      aTACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTAc                                        <  1:37045/141‑1 (MQ=255)

                                                                                                      aTACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTAc                                        <  2:33560/141‑1 (MQ=255)

                                                                                                          tactaAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACtttt                                    <  2:124517/141‑1 (MQ=255)

                                                                                                           actaAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACttttt                                   >  2:253362/1‑141 (MQ=255)

                                                                                                            ctaAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTg                                  <  2:82300/141‑1 (MQ=255)

                                                                                                               aaaTCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGatt                               >  2:267036/1‑141 (MQ=255)

                                                                                                                aaTCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGatta                              <  1:245180/141‑1 (MQ=255)

                                                                                                                  tctttcttAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGattatt                            >  2:194002/1‑141 (MQ=255)

                                                                                                                  tctttcttAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGattatt                            >  2:140906/1‑141 (MQ=255)

                                                                                                                   ctttcttAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGAttattt                           >  2:75488/1‑141 (MQ=255)

                                                                                                                   ctttcttAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGAttattt                           >  1:249994/1‑141 (MQ=255)

                                                                                                                      tcttAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGAttattttat                        >  1:196419/1‑141 (MQ=255)

                                                                                                                      tcttAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGAttattttat                        >  2:86088/1‑141 (MQ=255)

                                                                                                                        ttAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCTCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTttatta                      >  2:247325/1‑141 (MQ=255)

                                                                                                                        ttAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTttatta                      >  2:118851/1‑141 (MQ=255)

                                                                                                                         tAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTtattat                     >  1:254569/1‑141 (MQ=255)

                                                                                                                                ataCTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTatt              <  1:91394/141‑1 (MQ=255)

                                                                                                                                ataCTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTatt              <  2:110922/141‑1 (MQ=255)

                                                                                                                                   cTGTTTTGAATTGCATTCATTGTAAATGCCTCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTattttt           <  2:186810/141‑1 (MQ=255)

                                                                                                                                   cTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTattttt           >  1:272287/1‑141 (MQ=255)

                                                                                                                                   cTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTattttt           >  1:205989/1‑141 (MQ=255)

                                                                                                                                    tGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTattttta          >  1:225631/1‑141 (MQ=255)

                                                                                                                                     gTTTTGAATTGCATTCATTGTAAATGCCCCCTTTTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTatttttaa         >  1:56052/1‑141 (MQ=255)

                                                                                                                                     gTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTatttttaa         >  1:87152/1‑141 (MQ=255)

                                                                                                                                     gTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTatttttaa         >  1:210240/1‑141 (MQ=255)

                                                                                                                                       tttGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTatttttaatt       >  1:131170/1‑141 (MQ=255)

                                                                                                                                        ttGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTatttttaattt      <  1:135779/141‑1 (MQ=255)

                                                                                                                                         tGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTatttttaatttt     <  1:121630/141‑1 (MQ=255)

                                                                                                                                         tGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTatttttaatttt     >  1:285531/1‑141 (MQ=255)

                                                                                                                                          gAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTatttttaattttt    <  2:9302/141‑1 (MQ=255)

                                                                                                                                          gAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTatttttaattttt    >  2:224455/1‑141 (MQ=255)

                                                                                                                                           aaTTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTatttttaattttta   >  1:44343/1‑141 (MQ=255)

                                                                                                                                           aaTTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTatttttaattttta   >  1:64321/1‑141 (MQ=255)

                                                                                                                                            aTTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTAtttttaatttttaa  >  1:280588/1‑141 (MQ=255)

AAGTTTCAACGTTTTTATCTGCAATGTTATTTTTGTTTTGGGCTTGAGCTTCTTTGAAATTAAAATCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAA  >  NC_012417/2524‑2804

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.