| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2388283 = | 160 (1.140) | 7 (0.060) | 7/224 | NT | 5.1% | intergenic (+18/+84) | ribZ_1/sarV | Riboflavin transporter RibZ/HTH‑type transcriptional regulator SarV |
| ? | USA300TCH1516_ALE | 2388362 = | 121 (1.000) | intergenic (+97/+5) | ribZ_1/sarV | Riboflavin transporter RibZ/HTH‑type transcriptional regulator SarV | |||||
CTATAGTACTTCTCAAAAGAAATTGTTAGATAAAATTACTAAAGAAATAGAAGTGTTAAGCGTTACAAACTAAAAACTTAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2388439‑2388283‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gattggcatgctttttaAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAATAGAATACTTGTCTTTCATCCGTTTCAGAACGCAATTTAGAAATAAGCTCTTTTTTATA > USA300TCH1516_ALE/2388362‑2388501 CTATAGTACTTCTCAAAAGAAATTGTTAGATAAAATTACTAAAGAAATAGAAGTGTTAAGCGTTACAAACTAAAAACTTAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAG < 2:801743/141‑1 ttaAGTACTTCTCAAAAGAAATTGTTAGATAAAATTACTAAAGAAATAGAAGTGTTAAGCGTTACAAACTAAAAACTTAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGA < 3:118364/138‑1 TATAGTACTTCTCAAAAGAAATTGTTAGATAAAATTACTAAAGAAATAGAAGTGTTAAGCGTTACAAACTAAAAACTTAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGA > 2:1081984/1‑141 TATAGTACTTCTCAAAAGAAATTGTTAGATAAAATTACTAAAGAAATAGAAGTGTTAAGCGTTACAAACTAAAAACTTAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGA > 1:644762/1‑141 TATAGTACTTCTCAAAAGAAATTGTTAGATAAAATTACTAAAGAAATAGAAGTGTTAAGCGTTACAAACTAAAAACTTAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGA > 3:79508/1‑141 TATAGTACTTCTCAAAAGAAATTGTTAGATAAAATTACTAAAGAAATAGAAGTGTTAAGCGTTACAAACTAAAAACTTAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGA > 3:79537/1‑141 TATAGTACTTCTCAAAAGAAATTGTTAGATAAAATTACTAAAGAAATAGAAGTGTTAAGCGTTACAAACTAAAAACTTAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGA > 4:34356/1‑141 TATAGTACTTCTCAAAAGAAATTGTTAGATAAAATTACTAAAGAAATAGAAGTGTTAAGCGTTACAAACTAAAAACTTAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGA < 1:417573/141‑1 TATAGTACTTCTCAAAAGAAATTGTTAGATAAAATTACTAAAGAAATAGAAGTGTTAAGCGTTACAAACTAAAAACTTAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGA > 4:285776/1‑141 TATAGTACTTCTCAAAAGAAATTGTTAGATAAAATTACTAAAGAAATAGAAGTGTTAAGCGTTACAAACTAAAAACTTAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAAAGATGAAAAGAGA > 1:920090/1‑141 ATAGTACTTCTCAAAAGAAATTGTTAGATAAAATTACTAAAGAAATAGAAGTGTTAAGCGTTACAAACTAAAAACTTAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGAT < 1:333793/141‑1 ATAGTACTTCTCAAAAGAAATTGTTAGATAAAATTACTAAAGAAATAGAAGTGTTAAGCGTTACAAACTAAAAACTTAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGAT < 2:501440/141‑1 ATAGTACTTCTCAAAAGAAATTGTTAGATAAAATTACTAAAGAAATAGAAGTGTTAAGCGTTACAAACTAAAAACTTAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGAT > 1:616124/1‑141 ATAGTACTTCTCAAAAGAAATTGTTAGATAAAATTACTAAAGAAATAGAAGTGTTAAGCGTTACAAACTAAAAACTTAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGAT > 1:730255/1‑141 TAGTACTTCTCAAAAGAAATTGTTAGATAAAATTACTAAAGAAATAGAAGTGTTAAGCGTTACAAACTAAAAACTTAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATT < 2:687393/141‑1 AGTACTTCTCAAAAGAAATTGTTAGATAAAATTACTAAAGAAATAGAAGTGTTAAGCGTTACAAACTAAAAACTTAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTG > 2:664847/1‑141 AGTACTTCTCAAAAGAAATTGTTAGATAAAATTACTAAAGAAATAGAAGTGTTAAGCGTTACAAACTAAAAACTTAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTG > 1:847870/1‑141 AGTACTTCGCAAAAGAAATTGTTAGATAAAATTACTAAAGAAATAGAAGTGTTAAGCGTTACAAGCTAAAAACTTAACACGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTG < 2:181053/141‑1 TTCTCAAAAGAAATTGTTAGATAAAATTACTAAAGAAATAGAAGTGTTAAGCGTTACAAACTAAAAACTTAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATG > 2:825226/1‑141 TCTCAAAAGAAATTGTTAGATAAAATTACTAAAGAAATAGAAGTGTTAAGCGTTACAAACTAAAAACTTAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGC < 2:1146059/141‑1 TCTCAAAAGAAATTGTTAGATAAAATTACTAAAGAAATAGAAGTGTTAAGCGTTACAAACTAAAAACTTAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGC > 1:1135426/1‑141 CTCAAAAGAAATTGTTAGATAAAATTACTAAAGAAATAGAAGTGTTAAGCGTTACAAACTAAAAACTTAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCT > 2:480798/1‑141 CTCAAAAGAAATTGTTAGATAAAATTACTAAAGAAATAGAAGTGTTAAGCGTTACAAACTAAAAACTTAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCT > 2:956380/1‑141 TCAAAAGAAATTGTTAGATAAAATTACTAAAGAAATAGAAGTGTTAAGCGTTACAAACTAAAAACTTAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTT < 2:805741/141‑1 TCAAAAGAAATTGTTAGATAAAATTACTAAAGAAATAGAAGTGTTAAGCGTTACAAACTAAAAACTTAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTT < 1:97897/141‑1 TCAAAAGAAATTGTTAGATAAAATTACTAAAGAAATAGAAGTGTTAAGCGTTACAAACTAAAAACTTAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTT > 4:444398/1‑141 TCAAAAGAAATTGTTAGATAAAATTACTAAAGAAATAGAAGTGTTAAGCGTTACAAACTAAAAACTTAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTT < 2:888063/141‑1 TCAAAAGAAATTGTTAGATAAAATTACTAAAGAAATAGAAGTGTTAAGCGTTACAAACTAAAAACTTAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTT < 1:759362/141‑1 TCAAAAGAAATTGTTAGATAAAATTACTAAAGAAATAGAAGTGTTAAGCGTTACAAACTAAAAACTTAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTT < 1:24059/141‑1 TCAAAAGAAATTATTATATAAAATTGCTACAGAAATAGAAGTGTTAAGCGTTACAAACTAAAAACTGAAAGGGCATGGCAATCACTACAGCCTAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGGATGCTT < 4:112025/141‑1 CAAAAGAAATTGTTAGATAAAATTACTAAAGAAATAGAAGTGTTAAGCGTTACAAACTAAAAACTTAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTT < 3:126858/141‑1 AAAAGAAATTGTTAGATAAAATTACTAAAGAAATAGAAGTGTTAAGCGTTACAAACTAAAAACTTAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTT < 1:426143/141‑1 AAAGAAATTGTTAGATAAAATTACTAAAGAAATAGAAGTGTTAAGCGTTACAAACTAAAAACTTAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTT > 4:32915/1‑141 AAAGAAATTGTTAGATAAAATTACTAAAGAAATAGAAGTGTTAAGCGTTACAAACTAAAAACTTAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTT > 1:293933/1‑141 AAGAAATTGTTAGATAAAATTACTAAAGAAATAGAAGTGTTAAGCGTTACAAACTAAAAACTTAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTTA > 3:285957/1‑141 ATAGAAGTGTTAAGCGTTACAAACTAAAAACTTAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTAGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTTAGGTTTTTAGTTTGTAACGCTTAACACTTCT > 4:318921/1‑141 TTAAGCGTTACAAACTAAAAACTTAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTA > 2:630730/1‑141 TAAAAACTTAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAAC > 2:933688/1‑141 CAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACT > 2:1094374/1‑141 TGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAATAGAATACTTGTCTTTCA < 1:630730/141‑1 TGATGAATAGAGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAATAGAATACTTGTCTTTCATCCGTTTCAGAACG < 1:933688/141‑1 GATGAATAGAGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAATAGAATACTTGTCTTTCATCCGTTTCAGAACGC < 1:1094374/141‑1 aaTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAATAGAATACTTGTCTTTCATCCGTTTCAGAACGCAATTTAGAAAT < 2:163419/139‑1 TTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAATCGAATACTTGTCTTTCATCCGTTTCAGAACGCAATTTAGAAATA > 4:290382/1‑141 GGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAATAGAATACTTGTCTTTCATCCGTTTCAGAACGCAATTTAGAAATAAG < 1:152290/141‑1 GCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAATAGAATACTTGTCTTTCATCCGTTTCAGAACGCAATTTAGAAATAAGC < 2:718536/141‑1 CATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAATAGAATACTTGTCTTTCATCCGTTTCAGAACGCAATTTAGAAATAAGCT < 3:454241/141‑1 TGCTTTTTAAGTTTTTAGTTTTTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAATAGAATACTTGTCTTTCATCCGTTTCAGAACGCAATTTAGAAATAAGCTCT < 3:50151/141‑1 TGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAATAGAATACTTGTCTTTCATCCGTTTCAGAACGCAATTTAGAAATAAGCTCT > 2:580209/1‑141 TGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAATAGAATACTTGTCTTTCATCCGTTTCAGAACGCAATTTAGAAATAAGCTCT > 1:455040/1‑141 TGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAATAGAATACTTGTCTTTCATCCGTTTCAGAACGCAATTTAGAAATAAGCTCT > 1:232663/1‑141 GCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAATAGAATACTTGTCTTTCATCCGTTTCAGAACGCAATTTAGAAATAAGCTCTT > 1:590604/1‑141 CTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAATAGAATACTTGTCTTTCATCCGTTTCAGAACGCAATTTAGAAATAAGCTCTTT < 1:305002/141‑1 CTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAATAGAATACTTGTCTTTCATCCGTTTCAGAACGCAATTTAGAAATAAGCTCTTT < 1:1146059/141‑1 CTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAATAGAATACTTGTCTTTCATCCGTTTCAGAACGCAATTTAGAAATAAGCTCTTT > 3:53578/1‑141 TTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAATAGAATACTTGTCTTTCTTCCGTTTCAGAACGCAATTTAGAAATAAGCTCTTTTT < 2:882830/141‑1 TTTTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAATAGAATACTTGTCTTTCATCCGTTTCAGAACGCAATTTAGAAATAAGCTCTTTTT < 1:805741/141‑1 TTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAATAGAATACTTGTCTTTCATCCGTTTCAGAACGCAATTTAGAAATAAGCTCTTTTTTA > 2:360909/1‑141 TTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAATAGAATACTTGTCTTTCATCCGTTTCAGAACGCAATTTAGAAATAAGCTCTTTTTTA > 2:297685/1‑141 TTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAATAGAATACTTGTCTTTCATCCGTTTCAGAACGCAATTTAGAAATAAGCTCTTTTTTA > 1:482231/1‑141 TTAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAATAGAATACTTGTCTTTCATCCGTTTCAGAACGCAATTTAGAAATAAGCTCTTTTTTA > 1:1098277/1‑141 TAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAATAGAATACTTGTCTTTCATCCGTTTCAGAACGCAATTTAGAAATAAGCTCTTTTTTAT < 3:205017/141‑1 TAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAATAGAATACTTGTCTTTCATCCGTTTCAGAACGCAATTTAGAAATAAGCTCTTTTTTAT < 1:45694/141‑1 TAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAATAGAATACTTGTCTTTCATCCGTTTCAGAACGCAATTTAGAAATAAGCTCTTTTTTAT < 4:362004/141‑1 TAAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAATAGAATACTTGTCTTTCATCCGTTTCAGAACGCAATTTAGAAATAAGCTCTTTCTTAT < 3:501189/141‑1 AAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAATAGAATACTTGTCTTTCATCCGTTTCAGAACGCAATTTAGAAATAAGCTCTTTTTTATA < 3:306473/141‑1 AAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAATAGAATACTTGTCTTTCATCCGTTTCAGAACGCAATTTAGAAATAAGCTCTTTTTTATA > 1:823214/1‑141 AAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAATAGAATACTTGTCTTTCATCCGTTTCAGAACGCAATTTAGAAATAAGCTCTTTTTTATA < 1:203075/141‑1 CTATAGTACTTCTCAAAAGAAATTGTTAGATAAAATTACTAAAGAAATAGAAGTGTTAAGCGTTACAAACTAAAAACTTAAAAAGCATGCCAATCAGTACATCATAATTGCGTCTTGGGGACAGACAAATGATGAATAGAGATTGGCATGCTTTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2388439‑2388283‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gattggcatgctttttaAGTTTTTAGTTTGTAACGCTTAACACTTCTATTTCTTTAGTAATTTTATCTAACAATTTCTTTTGAGAAGTACTATAGAAATAGAATACTTGTCTTTCATCCGTTTCAGAACGCAATTTAGAAATAAGCTCTTTTTTATA > USA300TCH1516_ALE/2388362‑2388501 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |