New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | USA300TCH1516_ALE | 2679162 = | 153 (1.090) | 8 (0.060) | 6/246 | NT | 5.2% | intergenic (+34/‑355) | USA300HOU_RS13790/ssaA2_4 | hypothetical protein/Staphylococcal secretory antigen ssaA2 |
? | USA300TCH1516_ALE | 2679186 = | 147 (1.100) | intergenic (+58/‑331) | USA300HOU_RS13790/ssaA2_4 | hypothetical protein/Staphylococcal secretory antigen ssaA2 |
GATTGATTAACAGCGGATATTAGTGGGAAAATATAAAATGATTTAAAAAAAAGGTACATGGTTCTATAACTGAAAGAAAATAGCAATCACAATATACTAAATGTAGCAATAACATTAAAAATAGCGCCCTGCAAT‑CAGAGCGCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2679306‑2679162 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgctaTTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATTTTCTTTCAGTTATAGAACCATGTACCTTTTTTTTAAATCATTTTATATTTTCCCACTAATATCCGCTGTTAATCAATCCTGACATCCTTGTATCAC > USA300TCH1516_ALE/2679186‑2679324 GATTGATTAACAGCGGATATTAGTGGGAAAATATAAAATGATTTAAAAAAAAGGTACATGGCTCTATAACTGAAAGAAAATAGCAATCACAATATACTAAATGTAGCAATAACATTAAAAATAGCGCCCTGCAAT‑CAGAGC < 1:711776/141‑1 ATTGATTAACAGCGGATATTAGTGGGAAAATATAAAATGATTTAAAAAAAAGGTACATGGTTCTATAACTGAAAGAAAATAGCAATCACAATATACTAAATGTAGCAATAACATTAAAAATAGCGCCCTGCAAT‑CAGAGCG < 2:213147/141‑1 ATTGATTAACAGCGGATATTAGTGGGAAAATATAAAATGATTTAAAAAAAAGGTACATGGTTCTATAACTGAAAGAAAATAGCAATCACAATATACTAAATGTAGCAATAACATTAAAAATAGCGCCCTGCAAT‑CAGAGCG < 2:129347/141‑1 TGATTAACAGCGGATATTAGTGGGAAAATATAAAATGATTTAAAAAAAAGGTACATGGTTCTATAACTGAAAGAAAATAGCAATCACAATATACTAAATGTAGCAATAACATTAAAAATAGCGCCCTGCAAT‑CAGAGCGCT < 2:1137083/141‑1 TGATTAACAGCGGATATTAGTGGGAAAATATAAAATGATTTAAAAAAAAGGTACATGGTTCTATAACTGAAAGAAAATAGCAATCACAATATACTAAATGTAGCAATAACATTAAAAATAGCGCCCTGCAAT‑CAGAGCGCT < 4:155517/141‑1 TGATTAACAGCGGATATTAGTGGGAAAATATAAAATGATTTAAAAAAAAGGTACATGGTTCTATAACTGAAAGAAAATAGCAATCACAATATACTAAATGTAGCAATAACATTAAAAATAGCGCCCTGCAAT‑CAGAGCGCT < 1:108661/141‑1 TGATTAACAGCGGATATTAGTGGGAAAATATAAAATGATTTAAAAAAAAGGTACATGGTTCTATAACTGAAAGAAAATAGCAATCACAATATACTAAATGTAGCAATAACATTAAAAATAGCGCCCTGCAAT‑CAGAGCGCT < 1:37962/141‑1 TGATTAACAGCGGATATTAGTGGGAAAATATAAAATGATTTAAAAAAAAGGTACATGGTTCTATAACTGAAAGAAAATAGCAATCACAATATACTAAATGTAGCAATAACATTAAAAATAGCGCCCTGCAAT‑CAGAGCGCT < 1:181093/141‑1 GATTAACAGCGGATATTAGTGGGAAAATATAAAATGATTTAAAAAAAAGGTACATGGTTCTATAACTGAAAGAAAATAGCAATCACAATATACTAAATGTAGCAATAACATTAAAAATAGCGCCCTGCAAT‑CAGAGCGCTA > 1:500950/1‑141 AAATGATTTAAAAAAAAGGTACATGGTTCTATAACTGAAAGAAAATAGCAATCACAATATACTAAATGTAGCAATAACATTAAAAATAGCGCTCTG‑ATTGCAGGGCGCTATTTTTAATGTTATTG < 1:556557/125‑1 AAATGATTTAAAAAAAAGGTACATGGTTCTATAACTGAAAGAAAATAGCAATCACAATATACTAAATGTAGCAATAACATTAAAAATAGCGCTCTG‑ATTGCAGGGCGCTATTTTTAATGTTATTG > 2:556557/1‑125 AAAAAAAAGGTACATGGTTCTATAACTGAAAGAAAATAGCAATCACAATATACTAAATGTAGCAATAACATTAAAAATAGCGCTCTG‑ATTGCAGGGCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCT < 3:114906/141‑1 AGCGCCCTGCAAT‑CAGAGCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATTTTCTTTCAGTTATAGAACCATGTACCTTTTTTTTAAATCATTTTATATTTTCCCACTAATATCCGCTGTTAATCA > 3:451195/1‑141 GCGCCCTGCAAT‑CAGAGCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATTTTCTTTCAGTTATAGAACCATGTACCTTTTTTTTAAATCATTTTATATTTTCCCACTAATATCCGCTGTTAATCAA > 3:51341/1‑141 GCGCCCTGCAAT‑CAGAGCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATTTTCTTTCAGTTATAGAACCATGTACCTTTTTTTTAAATCATTTTACATTTTCCCACTAATATCCGCTGTTAATCAA > 1:987275/1‑141 GCGCCCTGCAAT‑CAGAGCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATTTTCTTTCAGTTATAGAACCATGCACCTTTTTATTAAATCATTTTATATTTTCCCACTAATATCCGCTGTTAATCAA > 3:97830/1‑141 AT‑CAGAGCACTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATTTTCTTTCAGTTATAGAACCATGTACCTTTTTTTTAAATCATTTTATATTTTCCCACTAATATCCGCTGTTAATCAATCCTGACATC > 3:30658/1‑141 GCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATTTTCTTTCAGTTATAGAACCATGTACCTTTTTTTTAAATCATTTTATATTTTCCCACTAATATCCGCTGTTAATCAATCCTGACATCCTTGTA < 2:1136527/141‑1 GCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATTTTCTTTCAGTTATAGAACCATGTACCTTTTTTTTAAATCATTTTATATTTTCCCACTAATATCCGCTGTTAATCAATCCTGACATCCTTGTA < 2:181093/141‑1 CGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATTTTCTTTCAGTTATAGAGCCATGTACCTTTTTTTTAAATCATTTTATATTTTCCCACTAATATCCGCTGTTAATCAATCCTGACATCCTTGTAT < 1:948367/141‑1 CTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATTTTCTTTCAGTTATAGAACCATGTACCTTTTTTTTAAATCATTTTATATTTTCCCACTAATATCCGCTGTTAATCAATCCTGACATCCTTGTATCA < 2:1112674/141‑1 TATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATTTTCTTTCAGTTATAGAACCATGTACCTTTTTTTTAAATCATTTTATATTTTCCCACTAATATCCGCTGTTAATCAATCCTGACATCCTTGTATCAC < 1:344313/141‑1 GATTGATTAACAGCGGATATTAGTGGGAAAATATAAAATGATTTAAAAAAAAGGTACATGGTTCTATAACTGAAAGAAAATAGCAATCACAATATACTAAATGTAGCAATAACATTAAAAATAGCGCCCTGCAAT‑CAGAGCGCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2679306‑2679162 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgctaTTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATTTTCTTTCAGTTATAGAACCATGTACCTTTTTTTTAAATCATTTTATATTTTCCCACTAATATCCGCTGTTAATCAATCCTGACATCCTTGTATCAC > USA300TCH1516_ALE/2679186‑2679324 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |