BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1929987 =	132 (0.940)	7 (0.060)	7/232	NT	5.8%	intergenic (‑323/+547)	USA300TCH1516_01793/USA300HOU_RS09600	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	1930020 =	107 (0.850)	7 (0.060)	7/232	NT	5.8%	intergenic (‑356/+514)	USA300TCH1516_01793/USA300HOU_RS09600	hypothetical protein/hypothetical protein

Only 100 of 158 total aligned reads displayed.

GCAGAGAGGAGGTGTATAAGGTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCTTTTTGTAAAATATGCAAGGTTTTAAAGAGAAACATCAAGAACTAAAAAAGGCTC  >  USA300TCH1516_ALE/1929847‑1930127

ggatattgaacgcatcagtccaatttgacatagagccttttttagttcttgatgtttctctttaaaaccttgcatattttacaaaaagaaaaattagcagtataattaagacaacgaaaataagtatttacttatacacca                                                                                                                                              >  2:550197‑M1/141‑141 (MQ=255)

 gatattgaacgcatcagtccaatttgacatagagccttttttagttcttgatgtttctctttaaaaccttgcatattttacaaaaagaaaaattagcagtataattaagacaacgaaaataagtatttacttatacaccaa                                                                                                                                             >  2:284858‑M1/140‑141 (MQ=255)

   tattgaacgcatcagtccaatttgacatagagccttttttttttctttttgtttctctttaaaaccttgcatattttacaaaaagaaaaattagcagtataattaagacaacgaaaataagtatttacttatacaccAATc                                                                                                                                           <  4:459836‑M1/4‑1 (MQ=255)

     ttgaacgcatcagtccaatttgacatagagccttttttagttcttgatgtttctctttaaaaccttgcatattttacaaaaagaaaaattagcagtataattaagacaacgaaaataagtatttacttatacaccAATccc                                                                                                                                         <  1:1033037‑M1/6‑1 (MQ=255)

     ttgaacgcatcagtccaatttgacatagagccttttttagttcttgatgtttctctttaaaaccttgcatattttacaaaaagaaaaattagcagtataattaagacaacgaaaataagtatttacttatacaccAATccc                                                                                                                                         <  1:457034‑M1/6‑1 (MQ=255)

        aacgcatcagtccaatttgacatagagccttttttagttcttgatgtttctctttaaaaccttgcatattttacaaaaagaaaaattagcagtataattaagacaacgaaaataagtatttacttatacaccAATCCCCTc                                                                                                                                      >  1:1070920‑M1/133‑141 (MQ=255)

         acgcatcagtccaatttgacatagagccttttttagttcttgatgtttctctttaaaaccttgcatattttacaaaaagaaaaattagcagtataattaagacaacgaaaataagtatttacttatacaccAATCCCCTCa                                                                                                                                     <  4:379049‑M1/10‑1 (MQ=255)

           gcatcagtccaatttgacatagagccttttttagttcttgatgtttctctttaaaaccttgcatattttacaaaaagaaaaattagcagtataattaagacaacgaaaataagtatttacttatacaccAATCCCCTCACt                                                                                                                                   <  2:571868‑M1/12‑1 (MQ=255)

            tgtATAAGGTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTa                                                                                                                                  >  2:730721/1‑141 (MQ=255)

              tataAGGTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGATAAGTAGACGCAAGACAAAATAGGTGACATATAGCCGCAACAATAAAAATCCCCTCACTAcc                                                                                                                                <  2:901000/141‑1 (MQ=255)

                taAGGTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGc                                                                                                                              <  4:199511/141‑1 (MQ=255)

                taAGGTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGc                                                                                                                              <  1:837304/141‑1 (MQ=255)

                 aaGGTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCa                                                                                                                             <  2:397642/141‑1 (MQ=255)

                   ggTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCaaa                                                                                                                           >  2:494544/1‑141 (MQ=255)

                   ggTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCaaa                                                                                                                           <  1:588336/141‑1 (MQ=255)

                   ccaatttgacatagagccttttttagttcttgatgtttctctttaaaaccttgcatattttacaaaaagaaaaattagcagtataattaagacaacgaaaataagtatttacttatacaccAATCCCCTCACTACCGCaaa                                                                                                                           >  2:303575‑M1/122‑141 (MQ=255)

                      gATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAg                                                                                                                        <  2:1076348/141‑1 (MQ=255)

                        tGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTg                                                                                                                      <  1:843960/141‑1 (MQ=255)

                        tGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTg                                                                                                                      <  1:671818/141‑1 (MQ=255)

                         gCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGa                                                                                                                     >  2:759268/1‑141 (MQ=255)

                          cTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAg                                                                                                                    <  1:325730/141‑1 (MQ=255)

                          cTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAg                                                                                                                    <  3:420394/141‑1 (MQ=255)

                          cTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAg                                                                                                                    <  1:468826/141‑1 (MQ=255)

                            tATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAggg                                                                                                                  >  2:402503/1‑141 (MQ=255)

                            tATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAggg                                                                                                                  >  3:205390/1‑141 (MQ=255)

                              ttttCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCACATAGTGAGGGGa                                                                                                                >  2:933344/1‑141 (MQ=255)

                              tagagccttttttagttcttgatgtttctctttaaaaccttgcatattttacaaaaagaaaaattagcagtataattaagacaacgaaaataagtatttacttatacaccAATCCCCTCACTACCGCAAATAGTGAGGGGa                                                                                                                <  2:576608‑M1/31‑1 (MQ=255)

                               tttCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGAt                                                                                                               >  1:530016/1‑141 (MQ=255)

                                ttCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGACATTGCATTTTTTTCTTATTGGCTAAGTAGACGCAATAAAAAATAGGTGACATATAGCCGCACAAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGAtt                                                                                                              <  1:1121534/141‑1 (MQ=255)

                                  cGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATCGTGAGGGGAGTgg                                                                                                            >  1:373060/1‑141 (MQ=255)

                                  cGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTgg                                                                                                            <  1:128240/141‑1 (MQ=255)

                                  cGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTgg                                                                                                            <  2:239079/141‑1 (MQ=255)

                                  cGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTgg                                                                                                            >  1:578168/1‑141 (MQ=255)

                                      cacaTCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGta                                                                                                        >  2:457034/1‑141 (MQ=255)

                                          tcatAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAg                                                                                                    <  2:502860/141‑1 (MQ=255)

                                          tcatAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAg                                                                                                    <  1:117216/141‑1 (MQ=255)

                                          tcatAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAg                                                                                                    <  1:234473/141‑1 (MQ=255)

                                             tAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTTGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTaa                                                                                                 >  2:1061703/1‑141 (MQ=255)

                                               gCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAAt                                                                                               >  4:46300/1‑141 (MQ=255)

                                                 aCCAGTCATCAGTGGCTGTGCCATTGCGTTTTTGTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTTACACATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATAc                                                                                             <  2:921088/141‑1 (MQ=255)

                                                  ccAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACt                                                                                            >  3:379049/1‑141 (MQ=255)

                                                  ccAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACt                                                                                            >  2:444417/1‑141 (MQ=255)

                                                  ccAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACt                                                                                            <  3:323896/141‑1 (MQ=255)

                                                  ccAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACt                                                                                            >  3:263088/1‑141 (MQ=255)

                                                       catcaGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTAttt                                                                                       <  1:975276/141‑1 (MQ=255)

                                                       catcaGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTAttt                                                                                       <  1:571653/141‑1 (MQ=255)

                                                        atcaGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTAtttt                                                                                      <  3:252290/141‑1 (MQ=255)

                                                          caGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCg                                                                                    <  3:352264/141‑1 (MQ=255)

                                                           aGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGt                                                                                   >  2:973498/1‑141 (MQ=255)

                                                           aGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGt                                                                                   <  2:994384/141‑1 (MQ=255)

                                                                  accttgcatattttacaaaaagaaaaattagcagtataattaagacaacgaaaataagtatttacttatacaccAATCCCCTCACTATTTGCGGTAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTa                                                                            <  3:177210‑M1/67‑1 (MQ=255)

                                                                     ccATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAAtt                                                                         >  1:1114195/1‑141 (MQ=255)

                                                                        ttGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATtata                                                                      >  1:1099779/1‑141 (MQ=255)

                                                                          gCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACt                                                                    >  2:1019576/1‑141 (MQ=255)

                                                                          gCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACt                                                                    >  3:304642/1‑141 (MQ=255)

                                                                             tttttttCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCt                                                                 <  4:85913/141‑1 (MQ=255)

                                                                               tttttCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTaa                                                               >  1:194281/1‑141 (MQ=255)

                                                                                 tttCTTCTTGGCTAAGTAGACGCAATACAAAATAGGTGACATGTAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTATTAATTATACTGCTAAtt                                                             <  2:1139602/141‑1 (MQ=255)

                                                                                 tttCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAAtt                                                             >  3:319063/1‑141 (MQ=255)

                                                                                 attCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAAtt                                                             <  1:551355/140‑1 (MQ=255)

                                                                                  aaaaagaaaaattagcagtataattaagacaacgaaaataagtatttacttatacaccAATCCCCTCACTATTTGCGGTAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAAttt                                                            <  1:388472‑M1/83‑1 (MQ=255)

                                                                                   tCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAAtttt                                                           >  1:553454/1‑141 (MQ=255)

                                                                                    cTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAAttttt                                                          >  3:483496/1‑141 (MQ=255)

                                                                                       aTTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCtt                                                       <  1:528599/141‑1 (MQ=255)

                                                                                         tGGCTATGTAGACCCAATACAAACTAGGTGACATATCTCCGCACCAATAAAAATCCCCTCACTACCGCAAATACTGAGGGTATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTACTTATACTGCTAATTTTTCtttt                                                     <  2:266990/141‑1 (MQ=255)

                                                                                         tGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCACATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCtttt                                                     >  2:380958/1‑141 (MQ=255)

                                                                                              aaGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTCTTTTCGTTGTCTTAATTATACTGCTAATTTTTCTTTTTGTaa                                                >  2:1141168/1‑141 (MQ=255)

                                                                                               aGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCTTTTTGTaaa                                               <  1:1061703/141‑1 (MQ=255)

                                                                                                 tAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCTTTTTGTAAAat                                             >  2:797682/1‑141 (MQ=255)

                                                                                                        aaTACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCTTTTTGTAAAATATGAAAg                                      >  2:856362/1‑141 (MQ=255)

                                                                                                         aTACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCTTTTTGTAAAATATGCAAgg                                     <  2:969331/141‑1 (MQ=255)

                                                                                                             gacaacgaaaataagtatttacttatacaccAATCCCCTCACCATTTGCGGTAGTGAGGGGAATCGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCTTTTTGTAATttatgcaaattttt                                 <  4:259078‑M1/110‑7 (MQ=255)

                                                                                                              aaaTAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCTTTTTGTAAAATATGCAAGGTTTTa                                <  2:363209/141‑1 (MQ=255)

                                                                                                              aaaTAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCTTTTTGTAAAATATGCAAGGTTTTa                                >  1:222282/1‑141 (MQ=255)

                                                                                                              aaaTAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCTTTTTGTAAAATATGCAAGGTTTTa                                <  1:91140/141‑1 (MQ=255)

                                                                                                               aaTAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCTTTTTGTAAAATATGCAAGGTTTTaa                               >  3:444383/1‑141 (MQ=255)

                                                                                                                 tAGGTGACATATAGACGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCTTTTTGTAAAATATGCAAGGTTTTAAag                             <  4:299349/141‑1 (MQ=255)

                                                                                                                   ggTGACATATAGCCGCACCAATAAAAATCCCCTCGCTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCTTTTTGTAAAATATGCAAGGTTTTAAagag                           <  2:722000/141‑1 (MQ=255)

                                                                                                                    gTGACATATAGCCGCACCAATAAAAATCCCCTCACTGCCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCTTTTTGTAAAATATGCAAGGTTTTAAAgaga                          <  2:1176357/141‑1 (MQ=255)

                                                                                                                    gTGACATAGAGCCGCACCAATAAAAATCCCCTCACTACCGCAATTAGTGAGGTGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACGGCTAATTTTTCTTTTTGTAAAATATGCAAGGTTTTAAAgaga                          <  2:218408/141‑1 (MQ=255)

                                                                                                                      gACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACCTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCTTTTTGTAAAATATGCAAGGTTTTAAAGAGaaa                        >  4:352354/1‑141 (MQ=255)

                                                                                                                       aCATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCTTTTTGTa                                                 <  1:809134/115‑1 (MQ=255)

                                                                                                                       aCATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCTTTTTGTa                                                 >  2:809134/1‑115 (MQ=255)

                                                                                                                       aCATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCTTTTTGTAAAATATGCAAGGTTTTAAAGAGAAAc                       <  2:578168/141‑1 (MQ=255)

                                                                                                                        cATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCTTTTTGTAAAATATGCAAGGTTTTAAAGAGAAACa                      >  4:122404/1‑141 (MQ=255)

                                                                                                                            taGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTT‑TTTTTGTAAAATATGCAAGGTTTTAAAGAGAAACATCAAg                 >  1:301309/1‑141 (MQ=255)

                                                                                                                             aGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCTTTTTGTAAAATATGCAAGGTTTTAAAGAGAAACATCAAg                 <  1:413818/141‑1 (MQ=255)

                                                                                                                               ccGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCTTTTTGTAAAATATGCAAGGTTTTAAAGAGAAACATCAAGaa               >  1:257073/1‑141 (MQ=255)

                                                                                                                                cGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCTTTTTGTAAAATATGCAAGGTTTTAAAGAGAAACATCAAGAAc              <  4:167924/141‑1 (MQ=255)

                                                                                                                                 gCACTAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCTTTTTGTAAAATATGCAAGGTTTTAAAGAGAAACATCAAGAACt             <  2:904311/141‑1 (MQ=255)

                                                                                                                                 gCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCTTTTTGTAAAATATGCAAGGTTTTAAAGAGAAACATCAAGAACt             >  1:741945/1‑141 (MQ=255)

                                                                                                                                  cACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCTTTTTGTAAAATATGCAAGGTTTTAAAGAGAAACATCAAGAACTa            <  1:883422/141‑1 (MQ=255)

                                                                                                                                  cACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCTTTTTGTAAAATATGCAAGGTTTTAAAGAGAAACATCAAGAACTa            <  1:1139332/141‑1 (MQ=255)

                                                                                                                                   aCCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCTTTTTGTAAAATATGCAAGGTTTTAAAGAGAAACATCAAGAACTaa           <  1:769324/141‑1 (MQ=255)

                                                                                                                                   aCCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCTTTTTGTAAAATATGCAAGGTTTTAAAGAGAAACAAAAAGAAATaa           <  2:1114195/141‑1 (MQ=255)

                                                                                                                                    ccAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCTTTTTGTAAAATATGCAAGGTTTTAAAGAGAAACATCAAGAACTaaa          >  1:630917/1‑141 (MQ=255)

                                                                                                                                    ccAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCTTTTTGTAAAATATGCAAGGTTTTAAAGAGAAACATCAAGAACTaaa          >  2:321313/1‑141 (MQ=255)

                                                                                                                                      aaTAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCTTTTTGTAAAATATGCAAGGTTTTAAAGAGAAACATCAAGAACTaaaaa        <  2:854886/141‑1 (MQ=255)

                                                                                                                                        tAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCTTTTTGTAAAATATGCAAGGTTTTAAAGAGAAACATCAAGAACTAAAAAAg      >  1:1017635/1‑141 (MQ=255)

                                                                                                                                         aaaaaTCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCTTTTTGTAAAATATGCAAGGTTTTAAAGAGAAACATCAAGAACTAAAAAAgg     >  2:682424/1‑141 (MQ=255)

GCAGAGAGGAGGTGTATAAGGTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCTTTTTGTAAAATATGCAAGGTTTTAAAGAGAAACATCAAGAACTAAAAAAGGCTC  >  USA300TCH1516_ALE/1929847‑1930127

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.