BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2857675 =	139 (0.990)	3 (0.020)	3/238	NT	2.3%	intergenic (+71/‑172)	nixA/nhoA	High‑affinity nickel‑transport protein NixA/N‑hydroxyarylamine O‑acetyltransferase
*	?	USA300TCH1516_ALE	2857737 =	125 (0.970)	3 (0.020)	3/238	NT	2.3%	intergenic (+133/‑110)	nixA/nhoA	High‑affinity nickel‑transport protein NixA/N‑hydroxyarylamine O‑acetyltransferase
Rejected: Frequency below/above cutoff threshold.

Only 100 of 169 total aligned reads displayed.

TTTAATTACTTGGCTTATTTCAAGTTTAATTTGGAAGTTTGGTCGCATAGAACACAAATGGTCTAGATAAGGCAACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTAAAATTTAAT  >  USA300TCH1516_ALE/2857535‑2857815

 aaataattctctaacttcgcaatattcataagcatagcgcctcctgtattcaagattataattaagttttaaacagaaatactgaaattttaaattcgaaagcattgaattttggataaatacattttaaatagaaaaaTa                                                                                                                                             <  1:86853‑M1/2‑1 (MQ=255)

   ataattctctaacttcgcaatattcataagcatagcgcctcctgtattaaagattataattaaattttaaacagaaatactgaaattttaaattcgaaagcattgaattttggataaatacattttaaatagaaaaaTACg                                                                                                                                           <  1:347030‑M1/4‑1 (MQ=255)

   ataattctctaacatcgcaatattcataagcatagcgcctcctgtattaaagattataattaaattttaaacagaaatactgaaattttaaattcgaaagcattgaattttggataaatacattttaaatagaaaaaTACg                                                                                                                                           >  3:246581‑M1/138‑141 (MQ=255)

     ttACTTGGCTTATTTCAAGTTTAATTTGGAAGTTTGGTCGCATAGAACACAAATGGTCTAGATAAGGCAACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGct                                                                                                                                         >  1:1039637/1‑141 (MQ=255)

      tACTTGGCTTATTTCAAGTTTAATTTGGAAGTTTGGTCGCATAGAACACAAATGGTCTAGATAAGGCAACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGctc                                                                                                                                        <  4:436753/141‑1 (MQ=255)

       ttctctaacttcgcaatattcataagcatagcgcctcctgtattaaagattataattaaattttaaacagaaatactgaaattttaaattcgaaagcattgaattttggataaatacattttaaatagaaaaaTACGctct                                                                                                                                       >  1:486295‑M1/134‑141 (MQ=255)

       ttctctaacttcgcaatattcataagcatagcgcctcctgtattaaagattataattaaattttaaacagaaatactgaaattttaaattcgaaagcattgaattttggataaatacattttaaatagaaaaaTACGctct                                                                                                                                       >  1:357589‑M1/134‑141 (MQ=255)

       ttctctaacttcgcaatattcataagcatagcgcctcctgtattaaagattataattaaattttaaacagaaatactgaaattttaaattcgaaagcattgaattttggataaatacattttaaatagaaaaaTACGctct                                                                                                                                       >  2:720914‑M1/134‑141 (MQ=255)

       ttctctaacttcgcaatattcataagcatagcgcctcctgtattaaagattataattaaattttaaacagaaatactgaaattttaaattcgaaagcattgaattttggataaatacaaaaaaaaaaaaaaaaTACGctct                                                                                                                                       >  2:1030852‑M1/134‑141 (MQ=255)

        tctctaacttcgcaatattcataagcatagctcctcctgtattaaagattataattaaattttaaacagaaatactgaaattttaaattcgaaagcattgaattttggataaatacattttaaatagaaaaaTACGCtctc                                                                                                                                      <  2:665881‑M1/9‑1 (MQ=255)

        tctctaacttcgcaatattcataagcatagcgcctcctgtattaaagattataattaaattttaaacagaaatactgaaattttaaattcgaaagcattgaattttggataaatacattttaaatagaaaaaTACGCtctc                                                                                                                                      <  2:865177‑M1/9‑1 (MQ=255)

        gatGGCTTATTTCAAGTTTAATTTGGAAGTTTGGTCGCATAGAACACAAATGGTCTAGATAAGGCAACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCtctc                                                                                                                                      <  2:854589/139‑1 (MQ=255)

        cTTGGCTTATTTCAAGTTTAATTTGGAAGTTTGGTCGCATAGAACACAAATGGTCTAGATAAGGCAACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTAGACATCCTGCACACTTCTTCCATTATGCTACGCtctc                                                                                                                                      >  4:381814/1‑141 (MQ=255)

        cTTGGCTTATTTCAAGTTTAATTTGGAAGTTTGGTCGCATAGAACACAAATGGTCTAGATAAGGCAACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACtctctc                                                                                                                                      >  2:347030/1‑141 (MQ=255)

          tGGCTTATTTCAAGTTTAATTTGGAAGTTTGGTCGCATAGAACACAAATGGTCTAGATAAGGCAACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTACACACCCTGCACACTTCTTCCATTATGCTACGCTCTCag                                                                                                                                    <  1:632689/141‑1 (MQ=255)

             cTTATTTCAAGTTTAATTTGGAAGTTTGGTCGCATAGAACACAAATGGTCTAGATAAGGCAACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCagtag                                                                                                                                 <  4:185029/141‑1 (MQ=255)

                aTTTCAAGTTTAATTTGGAAGTTTGGTCGCATAGAACACAAATGGTCTAGATAAGGCAACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCa                                                                                                                              <  1:1140122/141‑1 (MQ=255)

                 tttCAAGTTTAATTTGGAAGTTTGGTCGCATAGAACACAAATGGTCTAGATAAGGCAACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCAt                                                                                                                             >  1:1175843/1‑141 (MQ=255)

                  ttCAAGTTTAATTTGGAAGTTTGGTCGCATAGAACACAAATGGTCTAGATAAGGCAACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATc                                                                                                                            >  3:398005/1‑141 (MQ=255)

                    cAAGTTTAATTTGGAAGTTTGGTCGCATAGAACACAAATGGTCTAGATAAGGCAACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTAGACACACTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCtt                                                                                                                          >  1:314265/1‑141 (MQ=255)

                          tAATTTGGAAGTTTGGTCGCATAGAACACAAATGGTCTAGATAAGGCAACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATc                                                                                                                    <  2:571389/141‑1 (MQ=255)

                          tAATTTGGAAGTTTGGTCGCATAGAACACAAATGGTCTAGATAAGGCAACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATc                                                                                                                    >  2:84912/1‑141 (MQ=255)

                          tAATTTGGAAGTTTGGTCGCATAGAACACAAATGGTCTAGATAAGGCAACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATc                                                                                                                    <  1:992603/141‑1 (MQ=255)

                           aaTTTGGAAGTTTGGTCGCATAGCCCACCAATGGTCTAGACAAGGCAACTTCTCATGAAACCCCCTCTGTATTGTGGAATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCg                                                                                                                   <  1:893972/141‑1 (MQ=255)

                           aaTTTGGAAGTTTGGTCGCATAGAACACAAATGGTCTAGATAAGGCAACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATct                                                                                                                   <  3:386230/141‑2 (MQ=255)

                           aaTTTGGAAGTTTGGTCGCATAGAACACAAATGGTCTAGATAAGGCAACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCg                                                                                                                   <  4:295522/141‑1 (MQ=255)

                           aaTTTGGAAGTTTGGTCGCATAGAACACAAATGGTCTAGATAAGGCAACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCg                                                                                                                   >  2:282957/1‑141 (MQ=255)

                              tcggAAGTGTGGGCGCATAGAACACGAATGATCTAGATAAGGCAACTTGTCTTGCAACTACCATTGTCCTGTTGCATTTTTTGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCACTAGTCACCTTTAAATCGttt                                                                                                                >  2:1090640/3‑141 (MQ=255)

                               tGGAAGTTTGGTCGCATAGAACACAAATGGTCTAGATAAGGCAACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTc                                                                                                               >  1:210030/1‑141 (MQ=255)

                                ggAAGTTTGGTCGCATAGAACACAAATGGTCTAGATAAGGCAACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCt                                                                                                              <  2:544695/141‑1 (MQ=255)

                                 gAAGTTTGGTCGCATAGAACACAAATGGTCTAGATAAGGCAACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACCCTTCTACCATTCTGCTACGCGCATACTGGTCATCGTTAGATCGTTTCtt                                                                                                             >  1:940888/1‑141 (MQ=255)

                                   aGTTTGGTCGCATAGAACACAAATGGTCTAGATAAGGCAACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCtttt                                                                                                           <  2:930284/141‑1 (MQ=255)

                                   aGTTTGGTCGCATAGAACACAAATGGTCTAGATAAGGCAACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTAAATTACTTGCACTCTTTTACCATTATTCTTCGCTCTAAGTAGTCATCTTTAGATGGTTTCgttt                                                                                                           >  4:303299/1‑141 (MQ=255)

                                      ttGGTCGCATAGAACACAAATGGTCTAGATAAGGCAACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTaga                                                                                                        >  4:262141/1‑141 (MQ=255)

                                       tGGTCGCATAGAACACAAATGGTCTAGATAAGGCGACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTagag                                                                                                       >  4:386297/1‑141 (MQ=255)

                                       tGGTCGCATAGAACACAAATGGTCTAGATAAGGCAACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTagag                                                                                                       <  3:12145/141‑1 (MQ=255)

                                       gcctcctgtattaaagattataattaaattttaaacagaaatactgaaattttaaattcgaaagcattgaattttggataaatacattttaaatagaaaaaTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTagag                                                                                                       <  2:795246‑M1/40‑1 (MQ=255)

                                        ggTCGCATAGAACACAAATGGTTTAGATAAGGCAACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAgaga                                                                                                      <  3:420489/141‑1 (MQ=255)

                                           cGCATAGAACACAAATGGTCTAGATAAGGCAACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGa                                                                                                   >  1:208126/1‑141 (MQ=255)

                                             cATAGAACACAAATGGTCTAGATAAGGCAACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACt                                                                                                 <  1:1111174/141‑1 (MQ=255)

                                                 gAACACAAATGGTCTAGATAAGGCAACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCAt                                                                                             <  2:1056470/141‑1 (MQ=255)

                                                   acacAAATGGTCTAGATAAGGCAACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCAttt                                                                                           >  3:441397/1‑141 (MQ=255)

                                                     acaAATGGTCTAGATAAGGCAACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTATAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATGGTTTCTTTTAGAGATGACTTCATTTTg                                                                                         >  4:494926/1‑141 (MQ=255)

                                                       aaaTGGTCTAGATAAGGCAACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTgag                                                                                       <  2:1152970/141‑1 (MQ=255)

                                                         aTGGTCTAGATAAGGCAACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTAGACGCCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGagag                                                                                     >  3:10115/1‑141 (MQ=255)

                                                             attaaattttaaacagaaatactgaaattttaaattcgaaagcattgaattttggataaatacattttaaatagaaaaaTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTa                                                                                 >  2:961155‑M1/80‑141 (MQ=255)

                                                              cTAGATAAGGCAACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTAt                                                                                >  2:1004645/1‑141 (MQ=255)

                                                               tAGATAAGGCAACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTAtt                                                                               <  1:775917/141‑1 (MQ=255)

                                                                aGATAAGGCAACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTAttt                                                                              >  2:879296/1‑141 (MQ=255)

                                                                 gATAAGGCAACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTAtttt                                                                             <  3:23999/141‑1 (MQ=255)

                                                                  aTAAGGCAACTTGTCTTGCATCTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTAttttt                                                                            <  1:420270/141‑1 (MQ=255)

                                                                    tttaaacagaaatactgaaattttaaattcgaaagcattgaattttggataaatacattttaaatagaaaaaTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCt                                                                          >  1:795246‑M1/73‑141 (MQ=255)

                                                                      ggCAACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTAt                                                                        >  3:332884/1‑141 (MQ=255)

                                                                       gCAACTTGTCTTGCACCTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTAtt                                                                       <  4:223662/141‑1 (MQ=255)

                                                                        cAACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTAttt                                                                      >  1:532055/1‑141 (MQ=255)

                                                                        cAACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTAttt                                                                      >  1:548030/1‑141 (MQ=255)

                                                                              gTCTTGCAACTACCTTTGTATTGTTGCATTTTTAGACACTCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATg                                                                >  2:86853/1‑141 (MQ=255)

                                                                                cTTGCAACTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTa                                                              <  4:164411/141‑1 (MQ=255)

                                                                                cTTGCAACTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTa                                                              >  4:210678/1‑141 (MQ=255)

                                                                                 ttGCAACTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTAt                                                             <  3:435208/141‑1 (MQ=255)

                                                                                     aaCTACCTTTGTATTGTTGCATTTTTCGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTAt                                                         <  2:605505/141‑1 (MQ=255)

                                                                                        tACCTTTGTATTGTTGCATTTTTAGACACCCTGCTCACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCa                                                      <  1:1104842/141‑1 (MQ=255)

                                                                                              tGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTc                                                <  3:262331/141‑1 (MQ=255)

                                                                                              tGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTc                                                <  1:263267/141‑1 (MQ=255)

                                                                                                    gttgCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCt                                          >  1:140737/1‑141 (MQ=255)

                                                                                                        cATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTaaa                                                                                                                      <  1:71826/61‑1 (MQ=255)

                                                                                                        cATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCg                                      <  3:145841/141‑1 (MQ=255)

                                                                                                          tttttAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGaa                                    >  1:711653/1‑141 (MQ=255)

                                                                                                           ttttAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAAt                                   >  1:883783/1‑141 (MQ=255)

                                                                                                             ttAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAAttt                                 <  2:388096/141‑1 (MQ=255)

                                                                                                             ttAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTCTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAAttt                                 <  1:1019152/141‑1 (MQ=255)

                                                                                                              tAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTa                                >  3:301250/1‑141 (MQ=255)

                                                                                                                gACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCTTTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTaca                              >  4:171835/1‑139 (MQ=255)

                                                                                                                 acacCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTAGTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTaaaa                             >  1:936957/1‑141 (MQ=255)

                                                                                                                    cccTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAAttt                          >  1:654392/1‑141 (MQ=255)

                                                                                                                    cccTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAAttt                          >  2:477713/1‑141 (MQ=255)

                                                                                                                    cccTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAAttt                          >  2:703292/1‑141 (MQ=255)

                                                                                                                      cTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCa                        >  1:1025433/1‑141 (MQ=255)

                                                                                                                        gCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGt                      <  3:496298/141‑1 (MQ=255)

                                                                                                                          acacTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTAt                    <  3:168711/141‑1 (MQ=255)

                                                                                                                          acacTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTAt                    >  1:23876/1‑141 (MQ=255)

                                                                                                                          acacTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTAt                    >  1:254083/1‑141 (MQ=255)

                                                                                                                            acTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTAttt                  >  2:1171621/1‑141 (MQ=255)

                                                                                                                              ttcttcCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCt                <  1:519009/141‑1 (MQ=255)

                                                                                                                              ttcttcCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCt                >  2:1178140/1‑141 (MQ=255)

                                                                                                                              ttcttcCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCt                <  4:332884/141‑1 (MQ=255)

                                                                                                                                cttcCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGt              >  2:9450/1‑141 (MQ=255)

                                                                                                                                 ttcCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGtt             <  1:457440/141‑1 (MQ=255)

                                                                                                                                 ttcCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGtt             <  2:256959/141‑1 (MQ=255)

                                                                                                                                  tcCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGttt            >  2:246596/1‑141 (MQ=255)

                                                                                                                                   ccATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTa           >  1:134899/1‑141 (MQ=255)

                                                                                                                                   ccATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTa           >  1:1154138/1‑141 (MQ=255)

                                                                                                                                     aTTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTaaa         >  1:697170/1‑141 (MQ=255)

                                                                                                                                      ttATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTGTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTaaaa        <  1:766071/141‑1 (MQ=255)

                                                                                                                                       tATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCACTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCCGTATTTCTGTTTAAAAt       >  2:407217/1‑141 (MQ=255)

                                                                                                                                          gCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTAAAATTTa    >  2:706004/1‑141 (MQ=255)

                                                                                                                                           cTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTAAAATTTaa   >  1:636087/1‑141 (MQ=255)

                                                                                                                                           cTACGCTCTCAGTAGCCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTAAAATTTaa   >  1:533339/1‑141 (MQ=255)

                                                                                                                                            TACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTAAAATTTAAt  >  3:297275‑M1/1‑141 (MQ=255)

                                                                                                                                            TACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTAAAATTTAAt  >  4:143141‑M1/1‑141 (MQ=255)

TTTAATTACTTGGCTTATTTCAAGTTTAATTTGGAAGTTTGGTCGCATAGAACACAAATGGTCTAGATAAGGCAACTTGTCTTGCAACTACCTTTGTATTGTTGCATTTTTAGACACCCTGCACACTTCTTCCATTATGCTACGCTCTCAGTAGTCATCTTTAAATCGTTTCTTTTAGAGATGACTTCATTTTGAGAGCGTATTTTTCTATTTAAAATGTATTTATCCAAAATTCAATGCTTTCGAATTTAAAATTTCAGTATTTCTGTTTAAAATTTAAT  >  USA300TCH1516_ALE/2857535‑2857815

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.