BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	528464 =	96 (0.690)	7 (0.060)	5/230	NT	7.3%	intergenic (+5/‑162)	dtd3/rnmV_1	D‑aminoacyl‑tRNA deacylase/Ribonuclease M5
*	?	USA300TCH1516_ALE	528541 =	92 (0.740)	7 (0.060)	5/230	NT	7.3%	intergenic (+82/‑85)	dtd3/rnmV_1	D‑aminoacyl‑tRNA deacylase/Ribonuclease M5

Only 100 of 145 total aligned reads displayed.

AAGAAGTGTGCGAACAAACAACTAAAAATGCAGAGAAATTGTTTAATTTAAATTCATAAAGTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGAAAATCAATGAGTTTATAGTTGTAGAAGGACGAGATGATACTGAGCGTGTTAA  >  USA300TCH1516_ALE/528401‑528681

ttaatttcaaagctctaaccatctctatcgcacgtattccacatgcacgatattttaatttaaAAAAGTGAGAA‑GATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACtttttt                                                                                                                                             >  1:584805‑M1/64‑141 (MQ=255)

aagaagTGTGCGAACAAACAACTAAAAATGCAGAGAAATTGTTTAATTTAAATTCATAAAGTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACttttt                                                                                                                                              <  1:668785/141‑1 (MQ=255)

aagaagTGTGCGAACAAACAACTAAAAATGCAGAGAAATTGTTTAATTTAAATTCATAAAGTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACttttt                                                                                                                                              <  1:1144277/141‑1 (MQ=255)

   aagTGTGCGAACAAACAACTAAAAATGCAGAGAAATTGTTTAATTTAAATTCATAAAGTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTttaa                                                                                                                                           >  3:193271/1‑141 (MQ=255)

    agTGTGCGAACAAACAACTAAAAATGCAGAGAAATTGTTTAATTTAAATTCATAAAGTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTttaaa                                                                                                                                          >  1:348528/1‑141 (MQ=255)

    agTGTGCGAACAAACAACTAAAAATGCAGAGAAATTGTTTAATTTAAATTCATAAAGTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTttaaa                                                                                                                                          >  2:640427/1‑141 (MQ=255)

     gtgtGCGAACAAACAACTAAAAATGCAGAGAAATTGTTTAATTTAAATTCATAAAGTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTttaaat                                                                                                                                         >  1:1019155/1‑141 (MQ=255)

     gtgtGCGAACAAACAACTAAAAATGCAGAGAAATTGTTTAATTTAAATTCATAAAGTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTttaaat                                                                                                                                         <  4:153738/141‑1 (MQ=255)

      tcaaagctctaaccatctctatcgcacgtattccacatgcacgatattttaatttaaAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTttaaatt                                                                                                                                        >  3:188001‑M1/58‑141 (MQ=255)

         gagtacaaacaaAAAAAAATGCAGAGAAATTGTTTAATTTAAATTCATAAAGTTAAAAGTGAGAAAGATCACCGCCATATATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTttaaattaaa                                                                                                                                     <  2:860256/137‑1 (MQ=255)

         gCGAACAAACAACTAAAAATGCAGAGAAATTGTTTAATTTAAATTCATAAAGTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTttaaattaaa                                                                                                                                     >  4:261376/1‑141 (MQ=255)

         gCGAACAAACAACTAAAAATGCAGAGAAATTGTTTAATTTAAATTCATAAAGTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTttaaattaaa                                                                                                                                     >  2:937060/1‑141 (MQ=255)

             acaaacaaCTAAAAATGCAGAGAAATTGTTTAATTTAAATTCATAAAGTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAatat                                                                                                                                 <  2:274793/141‑1 (MQ=255)

              caaacaaCTAAAAATGCAGAGAAATTGTTTAATTTAAATTCATAAAGTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATc                                                                                                                                <  2:794824/141‑1 (MQ=255)

               aaacaaCTAAAAATGCAGAGAAATTGTTTAATTTAAATTCATAAAGTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCg                                                                                                                               <  3:379139/141‑1 (MQ=255)

                 acaacTAAAAATGCAGAGAAATTGTTTAATTTAAATTCATAAAGTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTg                                                                                                                             <  1:1034670/141‑1 (MQ=255)

                 acaacTAAAAATGCAGAGAAATTGTTTAATTTAAATTCATAAAGTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTg                                                                                                                             <  3:426001/141‑1 (MQ=255)

                  caacTAAAAATGCAGAGAAATTGTTTAAATTAAATTCATAAAGTTAAAAGTGAGAAAGATAACCGCAATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGc                                                                                                                            >  2:1123118/1‑141 (MQ=255)

                    acTAAAAATGCAGAGAAATTGTTTAATTTAAATTCATAAAGTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCAt                                                                                                                          >  1:234596/1‑141 (MQ=255)

                    acTAAAAATGCAGAGAAATTGTTTAATTTAAATTCATAAAGTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCAt                                                                                                                          >  1:15600/1‑141 (MQ=255)

                    acTAAAAATGCAGAGAAATTGTTTAATTTAAATTCATAAAGTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCAt                                                                                                                          >  1:889533/1‑141 (MQ=255)

                        aaaaTGCAGAGAAATTGTTTAATTTAAATTCATAAAGTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTgg                                                                                                                      >  3:247762/1‑141 (MQ=255)

                            tGCAGAGAAATTGTTTAATTTAAATTCATAAAGTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATa                                                                                                                  >  3:369631/1‑141 (MQ=255)

                            tGCAGAGAAATTGTTTAATTTAAATTCATAAAGTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATGCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATa                                                                                                                  >  1:918988/1‑141 (MQ=255)

                              cAGAGAAATTGTTTAATTTAAATTCATAAAGTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACg                                                                                                                >  1:819785/1‑141 (MQ=255)

                               agagAAATTGTTTAATTTAAATTCATAAAGTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGt                                                                                                               >  2:122268/1‑141 (MQ=255)

                                 agaAATTGTTTAATTTAAATTCATAAAGTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATTCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGc                                                                                                             <  1:623040/141‑1 (MQ=255)

                                   aaaTTGTTTAATTTAAATTCATAAAGTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGa                                                                                                           <  1:201193/141‑1 (MQ=255)

                                    aaTGGTGTAATTTAAAGTCATAAAGTTAAAAGTGAGAAAGATCACGGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGAt                                                                                                          <  2:923061/141‑1 (MQ=255)

                                     aTTGTTTAATTTAAATTCATAAAGTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATa                                                                                                         <  1:1128888/141‑1 (MQ=255)

                                            aatttaaATTCATAAAGTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATgg                                                                                                  <  2:1063022/141‑1 (MQ=255)

                                             atttaaATTCATAAAGTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGt                                                                                                 <  1:924883/141‑1 (MQ=255)

                                             atttaaATTCATAAAGTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATACTATATACGTTTACTATGCTATGGCTCTATCTCTCATTTTTAAATTAAAATATCGTGCAGGTGGAATACGTGCGATAGAGATGGt                                                                                                 <  1:237550/141‑1 (MQ=255)

                                                   aTTCATAAAGTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGc                                                                                           <  2:210018/141‑1 (MQ=255)

                                                    ttCATAAAGTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCt                                                                                          <  1:902998/141‑1 (MQ=255)

                                                    ttCATAAAGTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCt                                                                                          >  2:214867/1‑141 (MQ=255)

                                                     tCATAAAGTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCtt                                                                                         >  2:517654/1‑141 (MQ=255)

                                                     tCATAAAGTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCtt                                                                                         <  2:828819/141‑1 (MQ=255)

                                                       aTAAAGTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTTTTTTTTTTTATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCtttt                                                                                       >  2:84389/1‑140 (MQ=255)

                                                        tAAAGTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGa                                                                                      >  1:1127363/1‑141 (MQ=255)

                                                        tAAAGTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGa                                                                                      >  1:583959/1‑141 (MQ=255)

                                                        aatttaaaaaagtgagaaagaaccatagcatattaaacgaatatagcatcgtttacatttatggcggtgatctttctcacttttTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGa                                                                                      >  3:188001‑M2/85‑141 (MQ=255)

                                                          aaGTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGaaa                                                                                    <  2:413450/141‑1 (MQ=255)

                                                          aaGTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGaaa                                                                                    >  1:44457/1‑141 (MQ=255)

                                                            gTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAAtt                                                                                  >  4:356/1‑141 (MQ=255)

                                                             ttAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTa                                                                                 <  1:1070138/141‑1 (MQ=255)

                                                                AAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGa                                                                              <  1:576734‑M1/141‑1 (MQ=255)

                                                                 aagtgagaaagaaccatagcatattaaacgaatatagcatcgtttacatttatggcggtgatctttctcacttttTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGaa                                                                             >  3:347188‑M2/76‑141 (MQ=255)

                                                                   gtgagaaagaaccatagcatattaaacgaatatagcatcgtttacatttatggcggtgatctttctcacttttTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAAtt                                                                           >  2:1094601‑M2/74‑141 (MQ=255)

                                                                   gtgagaaagaaccatagcatattaaacgaatatagcatcgtttacatttatggcggtgatctttctcacttttTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAAtt                                                                           >  2:754892‑M2/74‑141 (MQ=255)

                                                                    TGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTg                                                                          >  3:153153‑M1/1‑141 (MQ=255)

                                                                    TGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTg                                                                          >  3:118885‑M1/1‑141 (MQ=255)

                                                                       gaaagaaccatagcatattaaacgaatatagcatcgtttacatttatggcggtgatctttctcacttttTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAg                                                                       >  1:270265‑M2/70‑141 (MQ=255)

                                                                       gaaagaaccatagcatattaaacgaatatagcatcgtttacatttatggcggtgatctttctcacttttTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGAAGGTCCGAGCTTTGAAATTAAGAATTGTAg                                                                       >  3:353199‑M2/70‑141 (MQ=255)

                                                                        AAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAgg                                                                      >  2:435137‑M1/1‑141 (MQ=255)

                                                                         AAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGa                                                                     >  1:937060‑M1/1‑141 (MQ=255)

                                                                         AAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCGCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGa                                                                     >  1:675618‑M1/1‑141 (MQ=255)

                                                                            ATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAgg                                                                  <  1:743952‑M1/141‑1 (MQ=255)

                                                                            ATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAgg                                                                  >  2:859706‑M1/1‑141 (MQ=255)

                                                                            ATCACCGCAATAAATGGAAACGGTGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAgg                                                                  >  2:101082‑M1/1‑141 (MQ=255)

                                                                             tCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGc                                                                 <  4:100918/141‑1 (MQ=255)

                                                                              cACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCg                                                                >  1:447298/1‑141 (MQ=255)

                                                                               aCCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGt                                                               <  1:969991/141‑1 (MQ=255)

                                                                               aCCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGt                                                               >  1:752334/1‑141 (MQ=255)

                                                                               aCCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGt                                                               <  3:229768/141‑1 (MQ=255)

                                                                                 cGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCTATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGttt                                                             >  2:920421/1‑141 (MQ=255)

                                                                                 cGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGATTTGAAATTAAGAATTGTAGGAAGGCGttt                                                             <  2:120936/141‑1 (MQ=255)

                                                                                      tAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATc                                                                                                                                >  4:25463/1‑69 (MQ=255)

                                                                                      tAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATc                                                                                                                                <  3:25463/69‑1 (MQ=255)

                                                                                      tAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAAt                                                        <  4:482365/141‑1 (MQ=255)

                                                                                      tAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAAt                                                        <  1:366795/141‑1 (MQ=255)

                                                                                         aTGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGaa                                                     >  4:355128/1‑141 (MQ=255)

                                                                                         aTGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGaa                                                     <  1:180016/141‑1 (MQ=255)

                                                                                          tGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGaaa                                                    <  1:628351/141‑1 (MQ=255)

                                                                                           ttAAACGATTCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCACGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGaaaa                                                   <  2:21055/140‑1 (MQ=255)

                                                                                           gTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGaaaa                                                   >  2:1023807/1‑141 (MQ=255)

                                                                                                cGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGAAAATCAAt                                              <  2:1003578/141‑1 (MQ=255)

                                                                                                cGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGAAAATCAAt                                              <  2:333648/141‑1 (MQ=255)

                                                                                                   tGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGAAAATCAATGAg                                           <  1:11059/141‑1 (MQ=255)

                                                                                                        tatTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAATTTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGAAAATCAATGAGTTtat                                      >  2:110913/1‑141 (MQ=255)

                                                                                                          ttCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGAAAATCAATGAGTTTATAg                                    >  3:266271/1‑141 (MQ=255)

                                                                                                          ttCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGAAAATCAATGAGTTTATAg                                    <  2:460426/141‑1 (MQ=255)

                                                                                                            cGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGAAAATCAATGAGTTTATAGtt                                  <  4:186003/141‑1 (MQ=255)

                                                                                                              tttAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGAAAATCAATGAGTTTATAGTTGt                                >  1:789563/1‑141 (MQ=255)

                                                                                                                       cTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGAAAATCAATGAGTTTATAGTTGTAGAAGGACg                       >  1:1191356/1‑141 (MQ=255)

                                                                                                                          tgtttctttctCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGAAAATCAATGAGTTTATAGTTGTAGAAGGACgaga                    <  4:332861/138‑1 (MQ=255)

                                                                                                                          tGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGAAAATCAATGAGTTTATAGTTGTAGAAGGACgaga                    >  2:51365/1‑141 (MQ=255)

                                                                                                                          tGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTACATGTGCAATACGTACGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGAAAATCAATGAGTTTATAGTTGTAGAAGGACgaga                    <  2:1164389/141‑1 (MQ=255)

                                                                                                                                tttctcacttttTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGAAAATCAATGAGTTTATAGTTGTAGAAGGACGAGATGATAc              <  3:44133‑M2/129‑1 (MQ=255)

                                                                                                                                    tcacttttTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGAAAATCAATGAGTTTATAGTTGTAGAAGGACGAGATGATACTGAg          <  1:796905‑M2/133‑1 (MQ=255)

                                                                                                                                     cacttttTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGAAAATCAATGAGTTTATAGTTGTAGAAGGACGAGATGATACTGAGc         >  3:302868‑M2/8‑141 (MQ=255)

                                                                                                                                     cacttttTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGAAAATCAATGAGTTTATAGTTGTAGAAGGACGAGATGATACTGAGc         >  3:302864‑M2/8‑141 (MQ=255)

                                                                                                                                       cttttTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGAAAATCAATGAGTTTATAGTTGTAGAAGGACGAGATGATACTGAGCgt       >  2:480102‑M2/6‑141 (MQ=255)

                                                                                                                                        ttttTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGAAAATCAATGAGTTTATAGTTGTAGAAGGACGAGATGATACTGAGCgtg      <  1:297148‑M2/137‑1 (MQ=255)

                                                                                                                                        ttttTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGAAAATCAATGAGTTTATAGTTGTAGAAGGACGAGATGATACTGAGCgtg      >  2:693583‑M2/5‑141 (MQ=255)

                                                                                                                                         tttTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGAAAATCAATGAGTTTATAGTTGTAGAAGGACGAGATGATACTGAGCgtgt     <  2:74554‑M2/138‑1 (MQ=255)

                                                                                                                                         tttTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGAAAATCAATGAGTTTATAGTTGTAGAAGGACGAGATGATACTGAGCgtgt     <  2:119423‑M2/138‑1 (MQ=255)

                                                                                                                                            ttaaattaaaATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGAAAATCAATGAGTTTATAGTTGTAGAAGGACGAGATGATACTGAGCGTGTTaa  <  4:329321/141‑1 (MQ=255)

                                                                                                                                            ttaaattaaaATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGAAAATCAATGAGTTTATAGTTGTAGAAGGACGAGATGATACTGAGCGTGTTaa  <  1:1110445/141‑1 (MQ=255)

                                                                                                                                            ttaaattaaaATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGAAAATCAATGAGTTTATAGTTGTAGAAGGACGAGATGATACTGAGCGTGTTaa  <  4:452166/141‑1 (MQ=255)

AAGAAGTGTGCGAACAAACAACTAAAAATGCAGAGAAATTGTTTAATTTAAATTCATAAAGTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGAAAATCAATGAGTTTATAGTTGTAGAAGGACGAGATGATACTGAGCGTGTTAA  >  USA300TCH1516_ALE/528401‑528681

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.