BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012417	= 1974	732 (0.920)	5 (0.010)	4/238	NT	0.73%	intergenic (+207/+119)	USA300HOU_RS14895/USA300HOU_RS14900	hypothetical protein/hypothetical protein
*	?	NC_012417	= 2041	687 (0.940)	5 (0.010)	4/238	NT	0.73%	intergenic (+274/+52)	USA300HOU_RS14895/USA300HOU_RS14900	hypothetical protein/hypothetical protein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 951 total aligned reads displayed.

TTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGA  >  NC_012417/1835‑2114

ttgttgCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACt                                                                                                                                             <  1:408746/141‑1 (MQ=255)

 tgttgCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTa                                                                                                                                            <  2:115328/141‑1 (MQ=255)

  gttgCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTaa                                                                                                                                           >  2:835396/1‑141 (MQ=255)

   ttgCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGACAAGAACCCTTAACTaaa                                                                                                                                          >  1:174283/1‑141 (MQ=255)

     gCTTACTTTTTTTTTTTCTATAAAGATGATGCTGTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCGTTTGTGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTACACt                                                                                                                                        >  2:291028/1‑141 (MQ=38)

     gCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGGGAAGAACCATTAACTAACCt                                                                                                                                        >  1:476816/1‑141 (MQ=255)

     gCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACt                                                                                                                                        >  1:306737/1‑141 (MQ=255)

      cTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACtt                                                                                                                                       >  1:498459/1‑141 (MQ=255)

       ttACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTg                                                                                                                                      >  1:638900/1‑141 (MQ=255)

       ttACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTg                                                                                                                                      >  1:266088/1‑141 (MQ=255)

            ttttGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGAc                                                                                                                                 <  1:211136/141‑1 (MQ=255)

             ttttttttTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACg                                                                                                                                <  1:526436/141‑1 (MQ=255)

                gTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAAt                                                                                                                             >  1:833964/1‑141 (MQ=255)

                gTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAAt                                                                                                                             >  1:661267/1‑141 (MQ=255)

                   tttCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTc                                                                                                                          >  1:379934/1‑141 (MQ=255)

                    ttCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATTAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAACTTTATTGATGTTGAGAAGAACCCTTGACTAAACTTGCAGACGAATGGCg                                                                                                                         >  2:418065/1‑141 (MQ=255)

                    ttCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCg                                                                                                                         >  1:368735/1‑141 (MQ=255)

                       tataAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCa                                                                                                                      <  2:383312/141‑1 (MQ=255)

                       tataAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTAACGTGGAGATAAGGAAAAATAGACGACGCATTTATGCCGAGAAAATATATTGAGGTTGAGAAGAACCCTTAACTAAGCTGGCAGAGGAATGTCggga                                                                                                                      >  1:279735/1‑139 (MQ=25)

                        ataAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCAt                                                                                                                     <  1:81852/141‑1 (MQ=255)

                        ataAAGATGATGCTTTTGACGAGAGGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCAt                                                                                                                     <  2:258156/141‑1 (MQ=255)

                         taAAGATGATGCTTTTGACGGGATGGTAGGAAAATATGTTTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAATCCTTAACTAAACTTGCAGACGAATGTCGGCATa                                                                                                                    <  1:199374/141‑1 (MQ=25)

                         taAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATa                                                                                                                    >  2:494979/1‑141 (MQ=255)

                            aGATGATGCTTTTGACGAGACGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTAGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGca                                                                                                                 >  1:588497/1‑140 (MQ=255)

                             gatgatGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGt                                                                                                                >  2:601623/1‑141 (MQ=255)

                               tgatgCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGa                                                                                                              <  1:720426/141‑1 (MQ=255)

                                gatgCTTTTGACGAGCAGAAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAACGTGAg                                                                                                             >  2:809612/1‑141 (MQ=255)

                                 atgCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAGAAATAGAGGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGGGGGAGc                                                                                                            >  2:139499/1‑141 (MQ=255)

                                 aagCTTTTGACGGGATGGAAGAAAAATATGATTATCATGAAGATAAGAAAAAAGAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGc                                                                                                            <  1:68019/139‑1 (MQ=255)

                                   gCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGGGAGCTa                                                                                                          >  1:392536/1‑141 (MQ=255)

                                    ttttgtaCGCGAGGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATCGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAGCTTGCAGACGAATGTCGGCATAGCGTGAGCTAt                                                                                                         <  2:553194/135‑1 (MQ=21)

                                    cTTTTGACGAGAGGGAAGAAACATATGATTATCATGAAGATAATAAAAAATAGACGCCGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCGTAGCTAAACTTGCAGACGAATGTCGGCATAGCGTGCGCTAt                                                                                                         >  1:434481/1‑141 (MQ=21)

                                     ttttGACGGGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTAtt                                                                                                        <  1:249315/141‑1 (MQ=255)

                                     ttttGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGAAGACGCATTTATGCCGAGAAAATGTATTGATGTTGAGAAGAACACTTAACTAAACTTGCAGACGAATGTCGGGATAGCGGTAGGTAtt                                                                                                        >  2:701431/1‑141 (MQ=25)

                                      tttGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAGAATAGACGACGCATTTATGACGAGAAAATTTATTGATATTGCGAAGAACCCTTACCTAAACTTTCAGACTACTTTCGGCGTACGTTGAGCTATTa                                                                                                       >  2:438437/1‑141 (MQ=255)

                                         taCGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACCCCGCATTGATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGc                                                                                                    <  1:784621/140‑1 (MQ=255)

                                         gACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGc                                                                                                    <  1:354905/141‑1 (MQ=255)

                                            gagaTGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGa                                                                                                 >  2:677276/1‑141 (MQ=255)

                                              gaTGGAAGAAAAATATGATAATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGAcc                                                                                               >  1:445855/1‑141 (MQ=255)

                                                   aagaaAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCg                                                                                          >  1:323878/1‑141 (MQ=255)

                                                    agaaAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGa                                                                                         <  2:151536/141‑1 (MQ=255)

                                                     gaaAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGAc                                                                                        <  1:650588/141‑1 (MQ=255)

                                                     gaaAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATATTGAGAAGAACCATAAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATGCGAc                                                                                        <  1:571381/141‑1 (MQ=255)

                                                      aaaaaTATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTGATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACa                                                                                       <  2:218925/141‑1 (MQ=255)

                                                          atatGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCCTAGTGCGAGCTATTAAGCCGACCATTCGACAAGtt                                                                                   <  1:829826/141‑1 (MQ=255)

                                                          atatGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGtt                                                                                   <  1:343694/141‑1 (MQ=255)

                                                          atatGATCATCGTGAAGTCAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGtt                                                                                   <  2:797761/141‑1 (MQ=255)

                                                           tatGATTATCATGAAGATAAGAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGttt                                                                                  <  1:750709/141‑1 (MQ=255)

                                                            atGATTATGATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGtttt                                                                                 <  1:507260/141‑1 (MQ=255)

                                                            atGATTATCATGAAGATAATAAAAAATAGACGTCGCATTTATGACGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGtttt                                                                                 <  1:221814/141‑1 (MQ=255)

                                                            atGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGACGGGAAATTATATAGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGtttt                                                                                 <  1:158682/141‑1 (MQ=18)

                                                                 tATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACaatcccaaaacttgtcgaatggtcggcttaatagctcacgctatgccgacattcgtctgcaagttt                                                                            <  1:552143‑M1/141‑67 (MQ=255)

                                                                 tATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGAt                                                                            <  1:625079/141‑1 (MQ=255)

                                                                     aTGAAGATAATAAAAAATAGACGATGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTgtt                                                                        >  1:116135‑M2/1‑138 (MQ=255)

                                                                       gAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTgttaa                                                                      >  2:505678‑M2/1‑136 (MQ=255)

                                                                         acataatacaAAGTAGACGACGGATTTATGCCGTGAATGTTTATTGGTGTGGAGAAGAACCCTTAACTAAACTTGCAGACGGATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACTAGTTTTAGGTTTgttaagg                                                                    >  2:469249‑M2/3‑134 (MQ=255)

                                                                         aGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTgttaagg                                                                    >  2:431149‑M2/1‑134 (MQ=255)

                                                                            taataaAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTgttaagggtt                                                                 >  1:797063‑M2/1‑131 (MQ=255)

                                                                                 aaaaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAg                                                            >  2:754003/1‑141 (MQ=40)

                                                                                 aaaaaTAGACGACGCATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAg                                                            <  2:733824/141‑1 (MQ=25)

                                                                                     aTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTc                                                        >  1:610126/1‑141 (MQ=38)

                                                                                      tAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGACCCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGCGGCTCa                                                       >  2:720207/1‑141 (MQ=255)

                                                                                         acgacgCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTAGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGATTACGAGGCTCAACg                                                    >  2:767266/1‑141 (MQ=255)

                                                                                          cgacgCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGt                                                   <  1:140512/141‑1 (MQ=33)

                                                                                           tacgCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTc                                                  <  1:186825/140‑1 (MQ=17)

                                                                                           gacgCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTc                                                  <  1:702843/141‑1 (MQ=32)

                                                                                             cgCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCaa                                                >  2:403257/1‑141 (MQ=32)

                                                                                              gctttgatgccgaGAAAATTTATTGATGTTGAGAAGAACCCTTAACaatcccaaaacttgtcgcatggtcggcttaatagctcacgctatgtcgaccttcgtctgcaagtttagttaagggttcttctcaacatcaataaa                                               <  1:773068‑M1/135‑96 (MQ=255)

                                                                                              gCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAAt                                               <  2:271027/141‑1 (MQ=32)

                                                                                                aTTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATaa                                             >  2:182118/1‑141 (MQ=32)

                                                                                                 tttATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGCCAAGTGTTGGGATTGTTAAGGGTTCCGACGCTCAACGTCAATaaa                                            >  1:229975/1‑141 (MQ=12)

                                                                                                 tttATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATaaa                                            >  2:628270/1‑141 (MQ=32)

                                                                                                 tttATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATaaa                                            >  2:522691/1‑141 (MQ=32)

                                                                                                  ttATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAg                                           >  1:90237/1‑141 (MQ=32)

                                                                                                  ttATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAg                                           >  2:328657/1‑141 (MQ=32)

                                                                                                    ttGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCa                                         <  2:231706/140‑1 (MQ=17)

                                                                                                      gCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAAt                                       <  2:685827/141‑1 (MQ=32)

                                                                                                           gaAAATTTTTTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGATGCTCAACGTCAATAAAGCAATTGGaa                                  <  2:658316/141‑1 (MQ=11)

                                                                                                           gaAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGGTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGaa                                  >  2:361354/1‑141 (MQ=11)

                                                                                                                TTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGgaataaaa                             <  1:735601‑M1/141‑2 (MQ=255)

                                                                                                                      GATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATc                       <  2:19970‑M1/141‑1 (MQ=255)

                                                                                                                      GATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATc                       >  1:757170‑M1/1‑141 (MQ=255)

                                                                                                                        tGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTGTCTa                     >  1:313355/1‑141 (MQ=21)

                                                                                                                         gTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTaa                    >  2:160879/1‑141 (MQ=38)

                                                                                                                           tGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAg                  >  2:45776/1‑141 (MQ=39)

                                                                                                                              gaagaaCCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCAGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATGTAAAGTaa               >  2:5396/1‑141 (MQ=255)

                                                                                                                              gaagaaCCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTAGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTaa               >  1:690348/1‑141 (MQ=255)

                                                                                                                               cggaaaacttaacaatccataagctggtcgaatggtctgcttaatatctcacgctatgccgacattcgtctgcaagtttagttaagggttcttctcaacatcaataaattttctcggcataaatgcgtcgtctatttttta              <  2:209332‑M1/134‑129 (MQ=255)

                                                                                                                               aagaaCCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAAc              >  2:582539/1‑141 (MQ=255)

                                                                                                                                 gaaCCCTTAACaatcccaaaacttgtcgaatggtcggcttaatagctcacgctatgccgacattcgtctgcaagtttagttaagggttcttctcaacatcaataaattttctcggcataaatgcgtcgtctattttttatt            >  1:4155‑M1/1‑11 (MQ=255)

                                                                                                                                 gaaCCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAAccc            <  2:338048/141‑1 (MQ=255)

                                                                                                                                  aaCCCTTAACaatcccaaaacttgtcgaatggtcggcttaatagctcacgctatgccgacattcgtctgcaagtttagttaagggttcttctcaacatcaataaattttctcggcataaatgcgtcgtctattttttatta           >  2:570436‑M1/1‑10 (MQ=255)

                                                                                                                                   aCCCTTAACaatcccaaaacttgtcgaatggtcggcttaatagctcacgctatgccgacattcgtctgcaagtttagttaagggttcttctcaacatcaataaattttctcggcataaatgcgttgtctattttttattat          <  1:466221‑M1/141‑133 (MQ=255)

                                                                                                                                     ccTTAACaatcccaaaacttgtcgaatggtcggcttaatagctcacgctatgccgacattcgtctgcaagtttagttaagggttcttctcaacatcaataaattttctcggcataaatgcgtcgtctattttttattatat        >  2:349716‑M1/1‑7 (MQ=255)

                                                                                                                                     ccTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGGCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTAt        >  2:106926/1‑141 (MQ=255)

                                                                                                                                       ttAACaatcccaaaacttgtcgaatggtcggcttaatagctcacgctatgccgacattcgtctgcaagtttagttaagggttcttctcaacatcaataaattttctcggcataaatgcgtcgtctattttttattatcttc      <  1:294793‑M1/141‑137 (MQ=255)

                                                                                                                                         aaCaatcccaaaacttgtcgaatggtcggcttaatagctcacgctatgccgacattcgtctgcaagtttagttaagggttcttctcaacatcaataaattttctcggcataaatgcgtcgtctattttttattatcttcat    <  1:459636‑M1/141‑139 (MQ=255)

                                                                                                                                          aCTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAg   >  2:303686/1‑141 (MQ=255)

                                                                                                                                           cTAAACTTGCAGCCGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGa  <  1:54047/141‑1 (MQ=255)

                                                                                                                                           cTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGa  >  1:100737/1‑141 (MQ=255)

TTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGA  >  NC_012417/1835‑2114

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.