New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_012417 2725 =941 (1.180)6 (0.010) 4/250 NT 0.66% intergenic (‑51/–) USA300HOU_RS14900/– hypothetical protein/–
?NC_012417 2752 = 914 (1.190)intergenic (‑78/–) USA300HOU_RS14900/– hypothetical protein/–
Rejected: Frequency below/above cutoff threshold.

Only 100 of 1086 total aligned reads displayed.

AAAATCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCA  >  NC_012417/2585‑2865
                                                                                                                                            |                                                                                                                                            
cctaaataaattaatgtgaaaaccaatgaataaataaaactttctaaaaagtcaaaaggattatcaaataaaatcgaattaacaaaattaaaaattaaaaatacagataataaaataatcaaaaattaaaaaaacttattc                                                                                                                                              <  1:145527‑M1/1‑1 (MQ=255)
cctaaataaattaatgtgaaaaccaatgaataaataaaactttctaaaaagtcaaaaggattatcaaataaaatcgaattaacaaaattaaaaattaaaaatacagataataaaataatcaaaaagtaaaaaaacttattc                                                                                                                                              >  2:646587‑M1/141‑141 (MQ=255)
aaaaTCCAAGACCATTGAAAGTATTGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAAc                                                                                                                                              <  2:311765/141‑1 (MQ=255)
aaaaTCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAAc                                                                                                                                              <  1:400763/141‑1 (MQ=255)
 ctaaataaattaatgtgaaaaccaatgaataaataaaactttctaaaaagtcaaaaggattatcaaataaaatcgaattaacaaaattaaaaattaaaaatacagataataaaataatcaaaaagtaaaaaaacttattCa                                                                                                                                             <  2:807493‑M1/2‑1 (MQ=255)
  taaataaattaatgtgaaaaccaatgaataaataaaactttctaaaaagtcaaaaggattatcaaataaaatcgaattaacaaaattaaaaattaaaaatacagataataaaataatcaaaaagtaaaaaaacttattCat                                                                                                                                            <  1:379957‑M1/3‑1 (MQ=255)
  aaTCCAAGACCATTTAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACat                                                                                                                                            <  2:232120/141‑1 (MQ=255)
   aTCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACata                                                                                                                                           >  2:117923/1‑141 (MQ=255)
   aTCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACata                                                                                                                                           >  2:769077/1‑141 (MQ=255)
          aCCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTACAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAAc                                                                                                                                    <  2:426221/141‑1 (MQ=255)
          aCCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAAc                                                                                                                                    >  1:577425/1‑141 (MQ=255)
            cATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACaa                                                                                                                                  >  1:691130/1‑141 (MQ=255)
                  aaGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGt                                                                                                                            >  1:123255/1‑141 (MQ=255)
                  aaGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGt                                                                                                                            >  2:152460/1‑141 (MQ=255)
                  aaGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGt                                                                                                                            >  1:420099/1‑141 (MQ=255)
                  aaGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGt                                                                                                                            >  2:522418/1‑141 (MQ=255)
                   aGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATCGAAGATTAACATATAAAAACAAAGGAGtt                                                                                                                           >  2:378309/1‑141 (MQ=255)
                       tGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAat                                                                                                                       >  1:184722/1‑141 (MQ=255)
                        ggTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAata                                                                                                                      >  2:132817/1‑141 (MQ=255)
                          ttAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATg                                                                                                                    >  1:349690/1‑141 (MQ=255)
                            aaaaTACTTAAAGATACTGCTAAAATTTTTCTTAGTGATGTACTGTTTTGAATTGCATTCATTGTAAATGCCCCCGTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAACACAAAGGAGTTTAATATGaa                                                                                                                  <  2:490824/141‑1 (MQ=255)
                             aaaTACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAAt                                                                                                                 <  1:359820/141‑1 (MQ=255)
                                  cTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGtt                                                                                                            >  2:604128/1‑141 (MQ=255)
                                  cTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGACCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGATTAAGtt                                                                                                            >  2:265956/1‑141 (MQ=255)
                                     aaaGATATTACTAAATTTTTTTTTAGTTATATACTGTTTAGAATTGCATTTATTGTAAATGCCCCCTTGATTTGTTATTTAAACGAATTCAATATAAAAAAAAAAAAAAAAAACAAAGGAGTTTAATATGAATAAGttttt                                                                                                         <  2:710788/141‑1 (MQ=255)
                                      aaGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGtttttt                                                                                                        <  1:765474/141‑1 (MQ=255)
                                        gATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTa                                                                                                      >  1:811607/1‑141 (MQ=255)
                                        aaTACTAATAAAATCTTTCTTAGTGATATAATGTTTTGAATTGCATTTATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTa                                                                                                      <  1:646083/140‑1 (MQ=255)
                                            ctactaAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACttt                                                                                                  >  2:394808/1‑141 (MQ=255)
                                            ctactaAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACttt                                                                                                  >  2:824958/1‑141 (MQ=255)
                                              actaAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACttttt                                                                                                >  2:352110/1‑141 (MQ=255)
                                              actaAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACttttt                                                                                                <  1:83506/141‑1 (MQ=255)
                                                taAAATCTTTCTTAGTGATATAATGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGa                                                                                              >  2:612324/1‑141 (MQ=255)
                                                     tctttcttAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTTTTTTTTTtttatt                                                                                         >  2:659958/1‑141 (MQ=255)
                                                       ttttttAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGAttatttt                                                                                       <  2:791024/141‑1 (MQ=255)
                                                       tttcttAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATACGTTTTTTTACTTTTTGAttatttt                                                                                       <  1:611800/141‑1 (MQ=255)
                                                         tcttAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATCTAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGTtttttttat                                                                                     >  1:155962/1‑141 (MQ=255)
                                                         tcttAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGAttattttat                                                                                     <  2:186427/141‑1 (MQ=255)
                                                           ttAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGAttatttttatt                                                                                   >  2:411418/1‑137 (MQ=255)
                                                           ttAGTGATATACTGTTTTGAATTGCATTCATTGTAAAAGCCCCCTTTTTTTGTTCTTTAAATGCATTCAATATAATATTAACAAATAAAAACAAAGGAGTTTAGTATGAATAAGTTTTGTTACTTTTTGATTATTttgtta                                                                                   >  2:211009/1‑141 (MQ=255)
                                                            tAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTtattat                                                                                  >  1:6038/1‑141 (MQ=255)
                                                            tAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTtattat                                                                                  >  1:369608/1‑141 (MQ=255)
                                                             aGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATc                                                                                 >  2:68077/1‑141 (MQ=255)
                                                               tGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTg                                                                               <  1:621411/141‑1 (MQ=255)
                                                                gATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGt                                                                              >  1:743643/1‑141 (MQ=255)
                                                                  tataCTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTat                                                                            <  1:455915/141‑1 (MQ=255)
                                                                    taCTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTattt                                                                          <  1:263174/141‑1 (MQ=255)
                                                                    taCTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTattt                                                                          <  2:334558/141‑1 (MQ=255)
                                                                    taCTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTattt                                                                          >  2:110090/1‑141 (MQ=255)
                                                                       tGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAATGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTattttta                                                                       >  1:170661/1‑141 (MQ=255)
                                                                         ttttGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTatttttaat                                                                     >  1:679863/1‑141 (MQ=255)
                                                                             gAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATTTTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTatttttaattttt                                                                 >  1:504664/1‑141 (MQ=255)
                                                                              aaTTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTatttttacttttta                                                                >  2:473059/1‑141 (MQ=255)
                                                                               aTTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTatttttaatttttat                                                               >  2:626449/1‑140 (MQ=255)
                                                                               aTTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTAtttttaatttttaa                                                               >  1:101071/1‑141 (MQ=255)
                                                                                ttGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATttttaatttttaat                                                              >  1:494976/1‑141 (MQ=255)
                                                                                 tGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTtttaatttttaatt                                                             <  1:754972/141‑1 (MQ=255)
                                                                                 tGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTtttaatttttaatt                                                             >  1:239982/1‑141 (MQ=255)
                                                                                 tGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTATTTTACTTTTTGAATATTTAATTATCTGTATTtttattctttaatt                                                             >  2:366816/1‑141 (MQ=255)
                                                                                 tGCATTCATTGTAAATGCCAGCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTtttaatttttaatt                                                             >  1:543900/1‑141 (MQ=255)
                                                                                    attcattGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATGGACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTAATTTATTATCTGTATTTTtaatttttaattttt                                                          >  1:560021/1‑140 (MQ=255)
                                                                                      tcattGTAAATGCCCCCTTGTTTTGTTATTTAAATGTATTCATTATGATATTTAGATGTTGAAACAAAGGTGTTTAATATGTTTGTGTTTTTTTACGTTTTGATTATTTTTTTTTTTGTTTTTTTTATTTTTATTTTTGtt                                                        >  2:197877/1‑141 (MQ=255)
                                                                                      tcattGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTATTTTTTAATTTTGtt                                                        >  2:445055/1‑141 (MQ=255)
                                                                                      tcattGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGtt                                                        >  1:59233/1‑141 (MQ=255)
                                                                                      tcattGTAAATGCCCCATTATTTTGTTATTTAAATGAAGTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGtt                                                        >  1:467496/1‑141 (MQ=255)
                                                                                       cattGTAAATGCCCCCTTGTTTTGTAATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTGTAATATGAATAAAGTTTTTTACTTTTTGATTATTTTATTATCTATATTTTTAATTCTTCATCTTGTTa                                                       >  2:168956/1‑141 (MQ=255)
                                                                                         ttGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAAt                                                     >  1:203422/1‑141 (MQ=255)
                                                                                           gTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAATTc                                                   <  2:456984/141‑1 (MQ=255)
                                                                                             aaaTGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAATTCGa                                                 >  1:660360/1‑141 (MQ=255)
                                                                                              aaTGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTCTTATCTGTATTTTTAATTTTTAATTTTGTTAATTCGAt                                                >  2:586823/1‑141 (MQ=255)
                                                                                                    cccTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGTTTATTTTTTTATCTGTATTTTTAATTTTTAATTTTGTTAATTCGATTTTAtt                                          >  2:298793/1‑141 (MQ=255)
                                                                                                    cccTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTGATTTTGTTAATTCGATTTTAtt                                          >  1:226028/1‑141 (MQ=255)
                                                                                                    cccTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAATTCGATTTTAtt                                          <  2:251291/141‑1 (MQ=255)
                                                                                                     ccTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAATTCGATTTTAttt                                         >  1:71058/1‑141 (MQ=255)
                                                                                                      cTTGGTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAATTCGATTTTATTTg                                        <  1:288798/141‑1 (MQ=255)
                                                                                                        tgttttgttATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAATTCGATTTTATTTGAt                                      <  1:321253/141‑1 (MQ=255)
                                                                                                        tgttttgttATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAATTCGATTTTATTTGAt                                      >  1:517016/1‑141 (MQ=255)
                                                                                                          ttttgttATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTATTTTTGTTAATTCGATTTTTTTTGATaa                                    >  2:56814/1‑141 (MQ=255)
                                                                                                            ttgttATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAATTCGATTTTATTTGATAATc                                  <  1:728479/141‑1 (MQ=255)
                                                                                                             ttttATTTAAATTAATTTAATATAATATTATCATATAAATACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTTATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAATTCGATTTTATTTGATATTcc                                 <  2:728718/139‑1 (MQ=255)
                                                                                                             tgttATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAATTCGATTTTATTTGATAATcc                                 >  2:834655/1‑141 (MQ=255)
                                                                                                             tgttATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAATTCGATTTTATTTGATAATcc                                 >  2:282942/1‑141 (MQ=255)
                                                                                                                tATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCttt                              <  1:91924/141‑1 (MQ=255)
                                                                                                                  tttAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAATTCGATTTTATTTGATAATTCTTTTg                            >  1:442898/1‑141 (MQ=255)
                                                                                                                      aaTGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACtt                        <  2:536166/141‑1 (MQ=255)
                                                                                                                        tGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACtttt                      >  2:694438/1‑141 (MQ=255)
                                                                                                                         gAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACttttt                     <  2:752160/141‑1 (MQ=255)
                                                                                                                         gAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACttttt                     <  1:302896/141‑1 (MQ=255)
                                                                                                                         gAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACttttt                     <  1:335494/141‑1 (MQ=255)
                                                                                                                          aaTTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATTAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTa                    >  2:549942/1‑141 (MQ=255)
                                                                                                                           aTTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAg                   >  1:799656/1‑141 (MQ=255)
                                                                                                                            ttCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTTTTTTTTTTTTATTTTATTAACTGTATTTTTAATTTTTAATTTTGTTAATTCGATTTTATTGGATATTTCTTTTGTCTTTTTAGa                  >  2:742377/1‑141 (MQ=255)
                                                                                                                              cAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTATTAATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGaaa                <  1:785364/141‑1 (MQ=255)
                                                                                                                                  ataatatTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGttt            <  2:669899/141‑1 (MQ=255)
                                                                                                                                  ataatatTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGttt            >  1:251661/1‑141 (MQ=255)
                                                                                                                                   taatatTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGtttt           <  1:700991/141‑1 (MQ=255)
                                                                                                                                        ttAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATATGTATTTTTCATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTtttattta      >  2:504715/1‑141 (MQ=255)
                                                                                                                                           aCATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTtatttatta   >  1:280024/1‑140 (MQ=255)
                                                                                                                                           aCATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTc   >  1:824375/1‑141 (MQ=255)
                                                                                                                                            CATATAAAAACAAAGGAGTTTAATATGAATCAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTACTTCGATTTTATTTGATAATCATTTTGACTTTTTACAAAGTTTTATTTATtct  <  1:526604‑M1/141‑2 (MQ=255)
                                                                                                                                            |                                                                                                                                            
AAAATCCAAGACCATTGAAAGTATGGTTAAAATACTTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTTTTTGATTATTTTATTATCTGTATTTTTAATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCA  >  NC_012417/2585‑2865

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.