New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000731	= 2326	555 (1.130)	21 (0.020)	9/284	44.3	1.5%	intergenic (+106/+62)	USA300HOU_pUSA300HOUMR0003/USA300HOU_pUSA300HOUMR0004	hypothetical protein/hypothetical protein
	?	NC_012417	= 1986	2208 (1.190)					intergenic (+219/+107)	USA300HOU_RS14895/USA300HOU_RS14900	hypothetical protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000731/2173‑2326 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cattcgTC‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCA  <  NC_012417/1986‑1839                                                                                                                                                                                                                                                                                                                         aggAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGTAGAACCCTGAACTCAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACC                                                                                                                                                                    <  2:771671/146‑1 AGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACC                                                                                                                                                                    >  2:163574/1‑149  GTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGGGAGCTATTAAGCCGACCA                                                                                                                                                                   >  2:1062061/1‑149   TAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCAT                                                                                                                                                                  <  2:1111081/149‑1    AATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATT                                                                                                                                                                 >  1:123955/1‑149     ATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTC                                                                                                                                                                >  1:513605/1‑149     ATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTC                                                                                                                                                                <  2:105998/149‑1     ATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTC                                                                                                                                                                >  2:852856/1‑149      TTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG                                                                                                                                                               <  2:210043/149‑1      TTGGTTATAAATTTCAGCAATTGTTTTTTAAGAGGATAAAGAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG                                                                                                                                                               >  2:932333/1‑149           TATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGGAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACAAATGTCGGCATAGCGGGAGGTATGACGCCGACCATTCcacacg                                                                                                                                                          >  2:533445/1‑143                         ATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATT                                                                                                                                                                 >  2:531232/1‑128                         ATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATT                                                                                                                                                                 <  1:531232/128‑1                             ttcTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCTCACGCTAT‑‑‑GCCGA‑CATTCGTC‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCT                                                                                                                           <  1:495065/146‑1                             TTTGTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCTCACGCTAT‑‑‑GCCGA‑CATTCGTC‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCT                                                                                                                           <  1:51454/149‑1                                                                                TGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑‑‑‑ACAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTATATTTTTTATTAT                                                                         >  1:288874/1‑149                                                                                    GTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑‑‑‑ACAAGTTTTGGGATTGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATT                                                                           >  1:352618/1‑149                                                                                    GTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑‑‑‑ACAAGTTTTGGGATTGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATT                                                                           >  2:810904/1‑149                                                                                         GAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGAT‑‑‑‑T‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTT                                                                      >  1:961045/1‑149                                                                                         GAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGAT‑‑‑‑T‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTT                                                                      >  2:336255/1‑149                                                                                              ACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGA‑CATTCGTC‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAAT                                                             >  1:985897/1‑149                                                                                                   TAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGTC‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATt                                                         >  1:187887/1‑148                                                                                                   TAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑‑‑‑ACAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTT                                                      >  2:973028/1‑149                                                                                                      CTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑‑‑‑ACAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCTTGATAATCATATTTTTt                                                   >  2:468998/1‑148                                                                                                        AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑‑‑‑ACAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTT                                                 >  2:80740/1‑149                                                                                                                AGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGTC‑‑‑TGCAAGTGT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCCAATTTTTCTTCCATt                                            >  2:598072/1‑148                                                                                                                 GACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGAC‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCc                                           >  1:442257/1‑148                                                                                                                   CGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGTC‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCCTGATAATCATATTTTTCTTCCATCTCG                                         >  1:86618/1‑149                                                                                                                   CGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGTC‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCt                                         >  1:834253/1‑148                                                                                                                   CGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGTC‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCt                                         >  2:665238/1‑148                                                                                                                     AATGTCGGCATAGCGTGAGCTATTAAGCCGA‑CATTCGTC‑‑‑TGCAAGTGT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAAAGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCCTGTCA                                      >  2:839702/1‑149                                                                                                                          CGGCATAGCGTGAGCTATTAAGCCGA‑CATTCGTC‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGC                                 >  1:510350/1‑149                                                                                                                              ATAGCGTGAGCTATTAAGCCGA‑CATTCGTC‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATaa                             >  2:643048/1‑147                                                                                                                                                   gtCATTTGTA‑‑‑TGGAAGCTT‑‑‑‑A‑‑GTTAAGGTTTCGTCTCAACATCAATAAATTTACTAGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAAAAAAAA         <  2:54593/147‑1                                                                                                                                                    CCATTCGTC‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAG        <  1:764324/149‑1                                                                                                                                                     CATTCGTC‑‑‑TGTAAGTTT‑‑‑‑A‑‑GTTAAGTTTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGT       <  2:53323/149‑1                                                                                                                                                     CATTCGTC‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGT       <  1:636146/149‑1                                                                                                                                                     CATTCGTC‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGT       <  2:620945/149‑1                                                                                                                                                     CATTCGTC‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAAAAAAAAAAAAAat       >  2:702128/1‑147                                                                                                                                                      ATTCGTC‑‑‑TGCTAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTA      <  2:253844/149‑1                                                                                                                                                      ATTCGTC‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGTCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTA      <  1:551245/149‑1                                                                                                                                                      ATTCGTC‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTA      <  1:243094/149‑1                                                                                                                                                      ATTCGTC‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTA      <  2:72814/149‑1                                                                                                                                                      ATTCGTC‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTA      <  1:377145/149‑1                                                                                                                                                      ATTCGTC‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTA      <  1:227825/149‑1                                                                                                                                                      ATTCGTC‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTA      <  1:362795/149‑1                                                                                                                                                      ATTCGTC‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTA      <  2:458155/149‑1                                                                                                                                                      ATTCGTC‑‑‑GGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCACCATGAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTA      <  1:470631/149‑1                                                                                                                                                       tttGTC‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAA     >  2:924043/4‑149                                                                                                                                                       tgCGTC‑‑‑TCCAAATTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCAGAAATGCGTCGTCTATTTTTTTTTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAA     <  2:194580/147‑1                                                                                                                                                       TTCGTC‑‑‑TGTAAGTTT‑‑‑‑A‑‑GTCACGGATTCTTACCCCCATCAATAAACTTTCTCGGCATACATGCGTCGTCTATTTTTTATTATCTTCATGATAAACATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAA     <  1:507531/149‑1                                                                                                                                                       TTCGTC‑‑‑TGCATGGTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCGCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAA     <  2:1062010/149‑1                                                                                                                                                       TTCGTC‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAA     <  1:276693/149‑1                                                                                                                                                       TTCGTC‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAA     <  2:635656/149‑1                                                                                                                                                       TTCGTC‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCATAATAAAAAAACAAAAAGTAA     <  2:425628/149‑1                                                                                                                                                       TTCGTC‑‑‑TGAAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCCTTATAGAAAAACAAAAAGTAA     <  1:98090/149‑1                                                                                                                                                        TCGTC‑‑‑TGCAATTTT‑‑‑‑A‑‑GTTACGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAG    <  2:604347/149‑1                                                                                                                                                        TCGTC‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAa    >  1:359477/1‑148                                                                                                                                                        TCGTC‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAG    <  1:895585/149‑1                                                                                                                                                        TCGTC‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATACAAAAAAAAAAATTAAa    >  1:233363/1‑148                                                                                                                                                        TCGTC‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCAGAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAG    <  1:980416/149‑1                                                                                                                                                         CGTC‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTGCGAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAACAACAAAAAGTAAGC   >  2:1074082/1‑149                                                                                                                                                         CGTC‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGC   >  1:145324/1‑149                                                                                                                                                         CGTC‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCAGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGC   >  1:763837/1‑149                                                                                                                                                         CGTC‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGATCTTCTAAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTATCTTCCATCTCGTCAAAAACATCATCTTTATAGAAAAACAAAAAGTAAGa   >  2:764591/1‑148                                                                                                                                                          GTC‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGATAAACAAAAAGTAAGCA  >  1:860788/1‑149                                                                                                                                                          GTC‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCA  >  2:293809/1‑149                                                                                                                                                          GTC‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCA  <  1:48568/149‑1                                                                                                                                                          GTC‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCA  >  1:109495/1‑149                                                                                                                                                          GTC‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCACGATCCTCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCA  <  2:787940/149‑1                                                                                                                                                                                                                                                                                                                         AGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000731/2173‑2326 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cattcgTC‑‑‑TGCAAGTTT‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCA  <  NC_012417/1986‑1839

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.